Conservation of cofitness between Sama_0887 and Sama_0169 in Shewanella amazonensis SB2B

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0887 hypothetical protein (RefSeq) 1.0 Sama_0169 type II and III secretion system protein (RefSeq) 0.46 1
Shewanella sp. ANA-3 0.85 Shewana3_3019 cytochrome c assembly protein (RefSeq) 0.82 Shewana3_0151 general secretion pathway protein D (RefSeq) low > 73
Shewanella oneidensis MR-1 0.84 SO1355 membrane protein, putative (NCBI ptt file) 0.82 SO0166 gspD general secretion pathway protein D (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.80 Shew_1061 cytochrome c assembly protein (RefSeq) 0.81 Shew_3619 general secretion pathway protein D (RefSeq) — —
Klebsiella pneumoniae MKP103 0.39 KDGMDA_02230 Cytochrome C assembly protein 0.40 KDGMDA_13345 GspD family T2SS secretin variant PulD low > 95
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_01095 Inner membrane protein YpjD 0.46 OHPLBJKB_00739 Type II secretion system protein D low > 74
Escherichia coli ECOR38 0.37 HEPCGN_20285 ypjD Inner membrane protein YpjD 0.46 HEPCGN_18050 gspD general secretion pathway protein D low > 88
Escherichia coli ECRC100 0.37 OKFHMN_21165 ypjD Inner membrane protein YpjD 0.39 OKFHMN_00285 etpD variant type II secretion system secretin EtpD low > 79
Escherichia coli ECOR27 0.37 NOLOHH_12840 ypjD Inner membrane protein YpjD 0.46 NOLOHH_10975 gspD general secretion pathway protein D low > 76
Escherichia coli ECRC102 0.37 NIAGMN_18935 ypjD Inner membrane protein YpjD 0.39 NIAGMN_28605 etpD variant type II secretion system secretin EtpD low > 80
Escherichia coli ECRC101 0.37 MCAODC_11695 ypjD Inner membrane protein YpjD 0.39 MCAODC_15265 etpD variant type II secretion system secretin EtpD low > 87
Escherichia coli BL21 0.37 ECD_02500 cytochrome c assembly protein family inner membrane protein 0.46 ECD_02838 putative type II secretion protein GspD low > 61
Escherichia coli ECRC98 0.37 JDDGAC_24830 ypjD Inner membrane protein YpjD 0.39 JDDGAC_30295 etpD variant type II secretion system secretin EtpD low > 87
Escherichia coli Nissle 1917 0.37 ECOLIN_RS14755 inner membrane protein YpjD 0.46 ECOLIN_RS17085 type II secretion system secretin GspD low > 55
Escherichia coli BW25113 0.37 b2611 ypjD predicted inner membrane protein (RefSeq) 0.39 b3325 yheF putative general protein secretion protein (VIMSS) low > 76
Escherichia fergusonii Becca 0.37 EFB2_01281 Inner membrane protein YpjD 0.45 EFB2_00845 Secretin GspD 2 low > 86
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_02985 inner membrane protein YpjD 0.48 CSW01_13790 type II secretion system protein GspD — —
Klebsiella michiganensis M5al 0.37 BWI76_RS21535 inner membrane protein YpjD 0.41 BWI76_RS05090 type II secretion system protein GspD low > 92
Rahnella sp. WP5 0.37 EX31_RS07735 inner membrane protein YpjD 0.41 EX31_RS16165 type II secretion system secretin GspD low > 89
Alteromonas macleodii MIT1002 0.35 MIT1002_01295 Inner membrane protein YpjD 0.54 MIT1002_03976 Pullulanase secretion envelope PulD low > 70
Enterobacter sp. TBS_079 0.35 MPMX20_03481 Inner membrane protein YpjD 0.37 MPMX20_01515 Putative secretin GspD low > 85
Enterobacter asburiae PDN3 0.34 EX28DRAFT_2714 ABC-type uncharacterized transport system, permease component 0.37 EX28DRAFT_2079 type II secretion system protein D low > 76
Pectobacterium carotovorum WPP14 0.34 HER17_RS05105 inner membrane protein YpjD 0.42 HER17_RS06685 type II secretion system secretin GspD low > 75
Erwinia tracheiphila SCR3 0.33 LU632_RS15675 inner membrane protein YpjD 0.26 LU632_RS25230 gspD type II secretion system secretin GspD low > 73
Erwinia tracheiphila HP pepo 2.2 0.33 IJEDHG_01540 Cytochrome C assembly protein 0.26 IJEDHG_09690 Type II secretion system protein GspD low > 61
Dickeya dianthicola ME23 0.32 DZA65_RS17390 inner membrane protein YpjD 0.23 DZA65_RS15680 type II secretion system secretin GspD low > 75
Dickeya dianthicola 67-19 0.32 HGI48_RS16295 inner membrane protein YpjD 0.23 HGI48_RS14735 type II secretion system secretin GspD low > 71
Dickeya dadantii 3937 0.32 DDA3937_RS16185 inner membrane protein YpjD 0.40 DDA3937_RS14800 type II secretion system secretin GspD 0.76 28
Acinetobacter baumannii LAC-4 0.24 RR41_RS15305 cytochrome c biogenesis protein CcsA 0.23 RR41_RS17625 type II secretion system secretin GspD low > 55
Pseudomonas sp. DMC3 0.23 GFF1980 Inner membrane protein YpjD 0.14 GFF2989 Secretin OutD low > 89
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_04395 cytochrome C assembly protein 0.20 AO353_12545 type II secretion system protein GspD — —
Pseudomonas sp. BP01 0.22 JOY50_RS11665 inner membrane protein YpjD 0.15 JOY50_RS11570 gspD type II secretion system secretin GspD low > 84
Pseudomonas sp. RS175 0.22 PFR28_00325 Inner membrane protein YpjD 0.18 PFR28_01750 Secretin XcpQ low > 88
Marinobacter adhaerens HP15 0.22 HP15_756 cytochrome c assembly protein 0.23 HP15_2355 type II and III secretion system protein low > 73
Pseudomonas sp. S08-1 0.22 OH686_17715 Inner membrane protein YpjD 0.25 OH686_11840 type II secretion system protein D low > 80
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_1714 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.20 PfGW456L13_266 General secretion pathway protein D low > 87
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS24590 cytochrome c assembly protein 0.18 PFLU_RS11890 type II secretion system secretin GspD low > 109
Pseudomonas fluorescens SBW25 0.21 PFLU_RS24590 cytochrome c assembly protein 0.18 PFLU_RS11890 type II secretion system secretin GspD low > 109
Pseudomonas sp. SVBP6 0.21 COO64_RS04870 inner membrane protein YpjD 0.22 COO64_RS04775 gspD type II secretion system secretin GspD low > 93
Acinetobacter radioresistens SK82 0.21 MPMX26_02469 Inner membrane protein YpjD 0.23 MPMX26_00196 Secretin XcpQ low > 36
Pseudomonas stutzeri RCH2 0.21 Psest_3135 ABC-type uncharacterized transport system, permease component 0.22 Psest_2577 general secretion pathway protein D — —
Pseudomonas simiae WCS417 0.21 PS417_22930 cytochrome C assembly protein 0.18 PS417_11295 general secretion pathway protein GspD — —
Pseudomonas fluorescens FW300-N2C3 0.20 AO356_06415 cytochrome C assembly protein 0.21 AO356_09345 type II secretion system protein GspD low > 104
Pseudomonas fluorescens FW300-N2E2 0.20 Pf6N2E2_3151 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.21 Pf6N2E2_3746 General secretion pathway protein D low > 103
Pseudomonas aeruginosa PUPa3 0.19 DQ20_RS42890 inner membrane protein YpjD 0.24 DQ20_RS34155 xcpQ;inference=COORDINATES GspD family T2SS secretin variant XcpQ low > 101
Pseudomonas aeruginosa MRSN321 0.19 DY961_RS14235 inner membrane protein YpjD 0.24 DY961_RS01400 xcpQ;inference=COORDINATES GspD family T2SS secretin variant XcpQ low > 100
Pseudomonas aeruginosa PA14 0.19 IKLFDK_19130 inner membrane protein YpjD 0.24 IKLFDK_15800 GspD family T2SS secretin variant XcpQ low > 98
Kangiella aquimarina DSM 16071 0.17 B158DRAFT_2259 ABC-type uncharacterized transport system, permease component 0.34 B158DRAFT_0689 general secretion pathway protein D low > 40
Variovorax sp. OAS795 0.14 ABID97_RS06430 cytochrome c biogenesis protein CcsA 0.19 ABID97_RS06950 type II secretion system secretin GspD low > 91
Acidovorax sp. GW101-3H11 0.14 Ac3H11_4016 CcsA-related protein 0.15 Ac3H11_2030 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) low > 79
Variovorax sp. SCN45 0.13 GFF4429 Inner membrane protein YpjD 0.18 GFF5235 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) low > 127
Ralstonia solanacearum GMI1000 0.12 RS_RS14050 inner membrane protein YpjD 0.15 RS_RS15640 type II secretion system protein GspD 0.43 61
Hydrogenophaga sp. GW460-11-11-14-LB1 0.11 GFF598 CcsA-related protein 0.20 GFF1390 General secretion pathway protein D low > 90

Not shown: 18 genomes with orthologs for Sama_0887 only; 11 genomes with orthologs for Sama_0169 only