| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Bacteroides thetaiotaomicron VPI-5482 | 1.0 | BT4331 | | conserved hypothetical protein (NCBI ptt file) | 1.0 | BT0884 | | outer membrane efflux protein oprM precursor (NCBI ptt file) | 0.52 | 19 |
| Bacteroides ovatus ATCC 8483 | 0.97 | BACOVA_05134 | | hypothetical protein | 0.92 | BACOVA_02605 | | efflux transporter, outer membrane factor lipoprotein, NodT family | low | > 94 |
| Bacteroides stercoris CC31F | 0.87 | HMPREF1181_RS05925 | | class I SAM-dependent rRNA methyltransferase | 0.70 | HMPREF1181_RS14280 | | efflux transporter outer membrane subunit | low | > 56 |
| Phocaeicola dorei CL03T12C01 | 0.86 | ABI39_RS18215 | | class I SAM-dependent rRNA methyltransferase | 0.67 | ABI39_RS01700 | | TolC family protein | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.84 | HMPREF1058_RS05890 | | class I SAM-dependent rRNA methyltransferase | 0.67 | HMPREF1058_RS02450 | | TolC family protein | low | > 67 |
| Parabacteroides merdae CL09T00C40 | 0.76 | HMPREF1078_RS13685 | | class I SAM-dependent rRNA methyltransferase | 0.68 | HMPREF1078_RS07680 | | TolC family protein | low | > 61 |
| Paraburkholderia sabiae LMG 24235 | 0.36 | QEN71_RS00350 | | class I SAM-dependent rRNA methyltransferase | 0.23 | QEN71_RS07915 | | TolC family protein | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.36 | ABZR87_RS05070 | | class I SAM-dependent rRNA methyltransferase | 0.22 | ABZR87_RS19885 | | efflux transporter outer membrane subunit | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.35 | RPSI07_RS23695 | | class I SAM-dependent rRNA methyltransferase | 0.21 | RPSI07_RS03425 | | multidrug transporter | low | > 81 |
| Enterobacter sp. TBS_079 | 0.33 | MPMX20_01617 | | Ribosomal RNA large subunit methyltransferase I | 0.24 | MPMX20_01451 | | Toluene efflux pump outer membrane protein TtgI | low | > 85 |
| Enterobacter asburiae PDN3 | 0.33 | EX28DRAFT_1976 | | Predicted SAM-dependent methyltransferases | 0.24 | EX28DRAFT_2165 | | efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family | low | > 76 |
| Pantoea sp. MT58 | 0.33 | IAI47_12595 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.25 | IAI47_13160 | | efflux transporter outer membrane subunit | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.32 | LU632_RS10090 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.25 | LU632_RS09495 | | efflux transporter outer membrane subunit | low | > 74 |
| Dechlorosoma suillum PS | 0.32 | Dsui_0653 | | putative SAM-dependent methyltransferase | 0.25 | Dsui_3175 | | efflux transporter, outer membrane factor lipoprotein, NodT family | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.32 | CSW01_06820 | | ribosomal RNA large subunit methyltransferase I | 0.14 | CSW01_07065 | | multidrug resistance protein | low | > 62 |
| Variovorax sp. SCN45 | 0.28 | GFF4489 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) | 0.21 | GFF3508 | | Multidrug efflux system, outer membrane factor lipoprotein => OpmD of MexHI-OpmD system | low | > 127 |
| Variovorax sp. OAS795 | 0.27 | ABID97_RS06155 | | class I SAM-dependent methyltransferase | 0.19 | ABID97_RS10170 | | efflux transporter outer membrane subunit | 0.43 | 49 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.25 | Xcc-8004.5393.1 | | LSU m5C1962 methyltransferase RlmI | 0.21 | Xcc-8004.3475.1 | | RND efflux system, outer membrane lipoprotein CmeC | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.23 | ABZR86_RS16890 | | class I SAM-dependent rRNA methyltransferase | 0.23 | ABZR86_RS15395 | | efflux transporter outer membrane subunit | low | > 74 |
| Desulfovibrio vulgaris Miyazaki F | 0.22 | DvMF_1714 | | protein of unknown function Met10 (RefSeq) | 0.26 | DvMF_0034 | | RND efflux system, outer membrane lipoprotein, NodT family (RefSeq) | low | > 51 |
| Rhodanobacter denitrificans FW104-10B01 | 0.22 | LRK54_RS06920 | | class I SAM-dependent rRNA methyltransferase | 0.23 | LRK54_RS08145 | | TolC family protein | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.21 | LRK55_RS06665 | | class I SAM-dependent rRNA methyltransferase | 0.23 | LRK55_RS07895 | | TolC family protein | low | > 63 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.20 | DVU0495 | | conserved hypothetical protein (TIGR) | 0.26 | DVU3246 | | RND efflux system, outer membrane protein, NodT family (TIGR) | low | > 55 |
| Pseudomonas fluorescens GW456-L13 | 0.20 | PfGW456L13_977 | | LSU m5C1962 methyltransferase RlmI | 0.23 | PfGW456L13_524 | | Outer membrane component of tripartite multidrug resistance system | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.20 | AO353_08330 | | SAM-dependent methyltransferase | 0.22 | AO353_11235 | | RND transporter | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.20 | AO356_13260 | | SAM-dependent methyltransferase | 0.21 | AO356_27610 | | RND transporter | low | > 104 |
| Pseudomonas sp. RS175 | 0.20 | PFR28_04274 | | Ribosomal RNA large subunit methyltransferase I | 0.24 | PFR28_04798 | | putative efflux pump outer membrane protein TtgC | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.20 | PFLU_RS28525 | | class I SAM-dependent rRNA methyltransferase | 0.23 | PFLU_RS00675 | | efflux transporter outer membrane subunit | low | > 109 |
| Pseudomonas simiae WCS417 | 0.20 | PS417_26880 | | SAM-dependent methyltransferase | 0.23 | PS417_00665 | | RND transporter | low | > 88 |
| Rhodospirillum rubrum S1H | 0.20 | Rru_A3333 | | hypothetical protein (NCBI) | 0.22 | Rru_A3237 | | RND efflux system, outer membrane lipoprotein, NodT (NCBI) | low | > 58 |
| Pseudomonas fluorescens SBW25 | 0.20 | PFLU_RS28525 | | class I SAM-dependent rRNA methyltransferase | 0.23 | PFLU_RS00675 | | efflux transporter outer membrane subunit | 0.40 | 76 |
| Pseudomonas fluorescens FW300-N1B4 | 0.20 | Pf1N1B4_2307 | | LSU m5C1962 methyltransferase RlmI | 0.25 | Pf1N1B4_4831 | | Outer membrane protein assembly factor YaeT precursor | low | > 87 |
| Pseudomonas putida KT2440 | 0.19 | PP_5127 | | ribosomal RNA large subunit methyltransferase I | 0.24 | PP_1273 | | putative Multidrug efflux MFS outer membrane protein | low | > 96 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.19 | Psyr_4764 | | SAM-dependent methyltransferase | 0.20 | Psyr_2969 | | RND efflux system, outer membrane lipoprotein, NodT | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.19 | Psyr_4764 | | SAM-dependent methyltransferase | 0.20 | Psyr_2969 | | RND efflux system, outer membrane lipoprotein, NodT | low | > 86 |
Not shown: 46 genomes with orthologs for BT4331 only; 10 genomes with orthologs for BT0884 only