Conservation of cofitness between SO0873 and SO1139 in Shewanella oneidensis MR-1

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO0873 glutamyl-tRNA synthetase domain protein (NCBI ptt file) 1.0 SO1139 fklB peptidyl-prolyl cis-trans isomerase FklB (NCBI ptt file) 0.31 8
Shewanella sp. ANA-3 0.90 Shewana3_3405 glutamyl-tRNA synthetase, class Ic (RefSeq) 0.87 Shewana3_0965 peptidylprolyl isomerase, FKBP-type (RefSeq) low > 73
Shewanella amazonensis SB2B 0.68 Sama_0779 glutamyl-tRNA synthetase domain-containing protein (RefSeq) 0.81 Sama_2506 peptidyl-prolyl cis-trans isomerase FklB (RefSeq) low > 62
Shewanella loihica PV-4 0.65 Shew_3130 glutamate--tRNA ligase (RefSeq) 0.78 Shew_2841 peptidylprolyl isomerase, FKBP-type (RefSeq) low > 60
Enterobacter asburiae PDN3 0.51 EX28DRAFT_3733 glutamyl-queuosine tRNA(Asp) synthetase 0.56 EX28DRAFT_3390 FKBP-type peptidyl-prolyl cis-trans isomerases 1 low > 76
Escherichia coli BL21 0.50 ECD_00143 glutamyl-Q tRNA(Asp) synthetase 0.54 ECD_04079 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) low > 61
Enterobacter sp. TBS_079 0.50 MPMX20_00830 Glutamyl-Q tRNA(Asp) synthetase 0.55 MPMX20_00483 FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase low > 85
Escherichia coli ECOR27 0.50 NOLOHH_02695 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.54 NOLOHH_04335 fklB FKBP-type peptidyl-prolyl cis-trans isomerase low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03518 Glutamyl-Q tRNA(Asp) synthetase 0.54 OHPLBJKB_03828 FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase low > 74
Escherichia coli BW25113 0.50 b0144 yadB glutamyl-Q tRNA(Asp) synthetase (RefSeq) 0.54 b4207 fklB FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) (VIMSS) low > 76
Escherichia coli ECRC99 0.50 KEDOAH_17805 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.54 KEDOAH_16080 fklB FKBP-type peptidyl-prolyl cis-trans isomerase — —
Escherichia coli ECRC101 0.50 MCAODC_00865 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.54 MCAODC_02590 fklB FKBP-type peptidyl-prolyl cis-trans isomerase 0.26 21
Escherichia coli ECRC102 0.50 NIAGMN_08200 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.54 NIAGMN_09925 fklB FKBP-type peptidyl-prolyl cis-trans isomerase low > 80
Escherichia coli ECRC98 0.50 JDDGAC_13945 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.54 JDDGAC_15715 fklB FKBP-type peptidyl-prolyl cis-trans isomerase low > 87
Escherichia coli ECRC100 0.50 OKFHMN_10350 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.54 OKFHMN_12075 fklB FKBP-type peptidyl-prolyl cis-trans isomerase low > 79
Escherichia coli ECRC62 0.50 BNILDI_08975 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.54 BNILDI_07185 fklB FKBP-type peptidyl-prolyl cis-trans isomerase low > 75
Escherichia fergusonii Becca 0.50 EFB2_03900 Glutamyl-Q tRNA(Asp) synthetase 0.54 EFB2_04321 FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase low > 86
Escherichia coli ECOR38 0.50 HEPCGN_08300 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.54 HEPCGN_10280 fklB FKBP-type peptidyl-prolyl cis-trans isomerase low > 88
Escherichia coli Nissle 1917 0.50 ECOLIN_RS00795 tRNA glutamyl-Q(34) synthetase GluQRS 0.54 ECOLIN_RS24445 FKBP-type peptidyl-prolyl cis-trans isomerase low > 55
Klebsiella michiganensis M5al 0.49 BWI76_RS05010 tRNA glutamyl-Q synthetase 0.56 BWI76_RS02695 peptidyl-prolyl cis-trans isomerase low > 92
Serratia liquefaciens MT49 0.49 IAI46_21215 tRNA glutamyl-Q(34) synthetase GluQRS 0.57 IAI46_01730 FKBP-type peptidyl-prolyl cis-trans isomerase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF88 glutamyl-Q-tRNA synthetase 0.54 GFF860 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) low > 78
Klebsiella pneumoniae MKP103 0.48 KDGMDA_13265 tRNA glutamyl-Q(34) synthetase GluQRS 0.55 KDGMDA_11180 FKBP-type peptidyl-prolyl cis-trans isomerase low > 95
Dickeya dianthicola 67-19 0.48 HGI48_RS16055 tRNA glutamyl-Q(34) synthetase GluQRS 0.54 HGI48_RS17255 FKBP-type peptidyl-prolyl cis-trans isomerase low > 71
Dickeya dianthicola ME23 0.47 DZA65_RS17140 tRNA glutamyl-Q(34) synthetase GluQRS 0.54 DZA65_RS18345 peptidyl-prolyl cis-trans isomerase low > 75
Rahnella sp. WP5 0.47 EX31_RS03255 tRNA glutamyl-Q(34) synthetase GluQRS 0.55 EX31_RS08735 peptidylprolyl isomerase low > 89
Pectobacterium carotovorum WPP14 0.47 HER17_RS05575 tRNA glutamyl-Q(34) synthetase GluQRS 0.55 HER17_RS03920 FKBP-type peptidyl-prolyl cis-trans isomerase low > 75
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_03150 tRNA glutamyl-Q(34) synthetase GluQRS 0.61 CSW01_13000 peptidylprolyl isomerase low > 62
Pantoea agglomerans CFBP13505 P0401 0.47 PagCFBP13505_RS13360 tRNA glutamyl-Q(34) synthetase GluQRS 0.55 PagCFBP13505_RS11280 peptidyl-prolyl cis-trans isomerase low > 74
Dickeya dadantii 3937 0.47 DDA3937_RS15940 tRNA glutamyl-Q(34) synthetase GluQRS 0.55 DDA3937_RS17200 FKBP-type peptidyl-prolyl cis-trans isomerase low > 74
Pantoea sp. MT58 0.47 IAI47_15640 tRNA glutamyl-Q(34) synthetase GluQRS 0.54 IAI47_02685 FKBP-type peptidyl-prolyl cis-trans isomerase low > 76
Erwinia tracheiphila HP pepo 2.2 0.46 IJEDHG_15055 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.54 IJEDHG_13280 fklB FKBP-type peptidyl-prolyl cis-trans isomerase low > 61
Erwinia tracheiphila SCR3 0.46 LU632_RS20085 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.53 LU632_RS21700 fklB peptidylprolyl isomerase low > 74
Erwinia amylovora T8 0.46 OLJFJH_00770 tRNA glutamyl-Q(34) synthetase GluQRS 0.56 OLJFJH_02420 FKBP-type peptidyl-prolyl cis-trans isomerase low > 58
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_0057 glutamyl-queuosine tRNA(Asp) synthetase 0.58 B158DRAFT_1191 FKBP-type peptidyl-prolyl cis-trans isomerases 1 low > 40
Alteromonas macleodii MIT1002 0.44 MIT1002_03691 Glutamyl-Q tRNA(Asp) synthetase 0.63 MIT1002_03490 FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase low > 70
Pseudomonas aeruginosa PA14 0.42 IKLFDK_29995 tRNA glutamyl-Q(34) synthetase GluQRS 0.53 IKLFDK_00660 peptidylprolyl isomerase low > 100
Pseudomonas sp. S08-1 0.42 OH686_17275 glutamyl-queuosine tRNA(Asp) synthetase 0.53 OH686_16275 FKBP-type peptidyl-prolyl cis-trans isomerase FklB low > 80
Pseudomonas segetis P6 0.41 MPMX49_01256 Glutamyl-Q tRNA(Asp) synthetase 0.54 MPMX49_03950 FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase low > 75
Pseudomonas putida KT2440 0.40 PP_4694 Glutamyl-Q tRNA(Asp) synthetase 0.55 PP_0684 FKBP-type peptidyl-prolyl cis-trans isomerase low > 96
Pseudomonas sp. SVBP6 0.40 COO64_RS15075 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.54 COO64_RS03055 FKBP-type peptidyl-prolyl cis-trans isomerase low > 93
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1527 glutamyl-Q-tRNA synthetase 0.54 PfGW456L13_1464 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) low > 87
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_5159 glutamyl-Q-tRNA synthetase 0.54 Pf6N2E2_5096 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) low > 103
Pseudomonas sp. BP01 0.39 JOY50_RS27690 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.54 JOY50_RS24690 FKBP-type peptidyl-prolyl cis-trans isomerase low > 84
Pseudomonas sp. DMC3 0.39 GFF4033 Glutamyl-Q tRNA(Asp) synthetase 0.55 GFF3976 FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase low > 89
Pseudomonas stutzeri RCH2 0.39 Psest_1002 glutamyl-queuosine tRNA(Asp) synthetase 0.59 Psest_3390 FKBP-type peptidyl-prolyl cis-trans isomerases 1 low > 67
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_2861 glutamyl-Q-tRNA synthetase 0.55 Pf1N1B4_2793 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) low > 87
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_16090 glutamyl-Q tRNA(Asp) ligase 0.54 AO356_15780 peptidylprolyl isomerase low > 104
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_14415 glutamyl-Q tRNA(Asp) ligase 0.55 AO353_14080 peptidylprolyl isomerase low > 101
Pseudomonas lactucae CFBP13502 0.39 GEMAOFIL_04927 Glutamyl-Q tRNA(Asp) synthetase 0.53 GEMAOFIL_04867 FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase low > 93
Pseudomonas sp. RS175 0.39 PFR28_03715 Glutamyl-Q tRNA(Asp) synthetase 0.54 PFR28_03776 FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase low > 88
Pseudomonas simiae WCS417 0.38 PS417_23880 glutamyl-Q tRNA(Asp) ligase 0.52 PS417_23580 peptidylprolyl isomerase low > 88
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.53 PFLU_RS25395 FKBP-type peptidyl-prolyl cis-trans isomerase low > 109
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.53 PFLU_RS25395 FKBP-type peptidyl-prolyl cis-trans isomerase low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.53 Psyr_4255 FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type low > 86
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.53 Psyr_4255 FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type low > 86
Methylophilus sp. DMC18 0.37 GFF102 Glutamyl-Q tRNA(Asp) synthetase 0.43 GFF1799 FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase low > 43

Not shown: 28 genomes with orthologs for SO0873 only; 7 genomes with orthologs for SO1139 only