Conservation of cofitness between b3752 and b1422 in Escherichia coli BW25113

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3752 rbsK ribokinase (NCBI) 1.0 b1422 ydcI putative transcriptional regulator LYSR-type (VIMSS) 0.50 10
Escherichia coli ECRC98 1.00 JDDGAC_18350 rbsK ribokinase 0.99 JDDGAC_04145 ydcI Uncharacterized HTH-type transcriptional regulator YdcI — —
Escherichia coli ECRC101 1.00 OKFHMN_14730 rbsK ribokinase 0.99 OKFHMN_01655 ydcI Uncharacterized HTH-type transcriptional regulator YdcI — —
Escherichia coli ECOR27 1.00 NOLOHH_06865 rbsK ribokinase 0.99 NOLOHH_19335 ydcI Uncharacterized HTH-type transcriptional regulator YdcI — —
Escherichia coli ECRC101 1.00 MCAODC_05235 rbsK ribokinase 0.99 MCAODC_16280 ydcI Uncharacterized HTH-type transcriptional regulator YdcI — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04301 Ribokinase 1.00 OHPLBJKB_02293 HTH-type transcriptional regulator CatM low > 73
Escherichia coli ECRC99 1.00 KEDOAH_13420 rbsK ribokinase 0.99 KEDOAH_26785 ydcI Uncharacterized HTH-type transcriptional regulator YdcI — —
Escherichia coli ECRC102 1.00 NIAGMN_12485 rbsK ribokinase 0.99 NIAGMN_25790 ydcI Uncharacterized HTH-type transcriptional regulator YdcI — —
Escherichia coli ECRC62 1.00 BNILDI_04660 rbsK ribokinase 1.00 BNILDI_17790 ydcI Uncharacterized HTH-type transcriptional regulator YdcI — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS21570 ribokinase 1.00 ECOLIN_RS08220 LysR substrate-binding domain-containing protein — —
Escherichia fergusonii Becca 1.00 EFB2_04881 Ribokinase 1.00 EFB2_02558 HTH-type transcriptional regulator CatM low > 86
Escherichia coli BL21 1.00 ECD_03638 ribokinase 1.00 ECD_01379 putative DNA-binding transcriptional regulator low > 60
Escherichia coli ECOR38 0.99 HEPCGN_13440 rbsK ribokinase 0.99 HEPCGN_26160 ydcI Uncharacterized HTH-type transcriptional regulator YdcI low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF1705 Ribokinase (EC 2.7.1.15) 0.85 GFF2615 LysR family transcriptional regulator YdcI low > 78
Enterobacter sp. TBS_079 0.80 MPMX20_04615 Ribokinase 0.81 MPMX20_02212 HTH-type transcriptional regulator GbpR low > 85
Klebsiella michiganensis M5al 0.80 BWI76_RS00290 Ribokinase (EC 2.7.1.15) (from data) 0.87 BWI76_RS13280 LysR family transcriptional regulator low > 92
Enterobacter asburiae PDN3 0.77 EX28DRAFT_4028 ribokinase 0.82 EX28DRAFT_1254 Transcriptional regulator 0.60 38
Serratia liquefaciens MT49 0.71 IAI46_25055 ribokinase 0.51 IAI46_12810 LysR family transcriptional regulator low > 86
Pantoea sp. MT58 0.70 IAI47_00370 ribokinase 0.67 IAI47_09590 LysR family transcriptional regulator low > 76
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_2155 Carbohydrate kinase, PfkB 0.28 Psyr_2121 regulatory protein, LysR:LysR, substrate-binding protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_2155 Carbohydrate kinase, PfkB 0.28 Psyr_2121 regulatory protein, LysR:LysR, substrate-binding protein low > 86
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS20695 ribokinase 0.35 BPHYT_RS33450 LysR family transcriptional regulator low > 109
Ralstonia solanacearum GMI1000 0.37 RS_RS05015 ribokinase 0.41 RS_RS07250 pca operon transcription factor PcaQ low > 80
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS35905 ribokinase 0.35 QEN71_RS14825 pca operon transcription factor PcaQ low > 153
Ralstonia solanacearum PSI07 0.36 RPSI07_RS19230 ribokinase 0.40 RPSI07_RS16935 LysR family transcriptional regulator low > 81
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS09950 ribokinase 0.42 ABZR87_RS12080 pca operon transcription factor PcaQ low > 80
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS14235 ribokinase 0.42 RALBFv3_RS00565 pca operon transcription factor PcaQ — —
Ralstonia solanacearum UW163 0.35 UW163_RS11700 ribokinase 0.42 UW163_RS13895 pca operon transcription factor PcaQ — —
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS11500 Ribokinase (EC 2.7.1.15) (from data) 0.21 HSERO_RS05215 LysR family transcriptional regulator low > 78
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_165 Ribokinase (EC 2.7.1.15) 0.18 Pf6N2E2_1106 Chromosome initiation inhibitor low > 103
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS15070 ribokinase 0.19 ABZR86_RS04085 LysR family transcriptional regulator low > 74
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_6031 Ribokinase (EC 2.7.1.15) (from data) 0.28 Pf1N1B4_5585 LysR family transcriptional regulator YdcI low > 87
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_00950 Ribokinase (EC 2.7.1.15) (from data) 0.18 AO356_26165 LysR family transcriptional regulator low > 104
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_05229 ribokinase 0.35 H281DRAFT_03866 transcriptional regulator, LysR family low > 103
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_3908 Ribokinase (EC 2.7.1.15) 0.18 PfGW456L13_3928 Chromosome initiation inhibitor low > 87
Pseudomonas putida KT2440 0.32 PP_2458 ribokinase 0.31 PP_1713 Transcriptional regulator PcaQ low > 96
Azospirillum sp. SherDot2 0.32 MPMX19_02769 Ribokinase 0.17 MPMX19_06223 HTH-type transcriptional regulator GbpR low > 112
Paraburkholderia graminis OAS925 0.32 ABIE53_002321 ribokinase 0.37 ABIE53_004922 LysR family pca operon transcriptional activator low > 113
Variovorax sp. SCN45 0.32 GFF2136 Ribokinase (EC 2.7.1.15) 0.34 GFF2191 Pca operon transcriptional activator PcaQ low > 127
Variovorax sp. OAS795 0.30 ABID97_RS24775 ribokinase 0.36 ABID97_RS24375 LysR substrate-binding domain-containing protein — —
Agrobacterium fabrum C58 0.29 Atu4847 ribokinase 0.28 Atu4543 LysR family transcriptional regulator low > 89
Acidovorax sp. GW101-3H11 0.29 Ac3H11_1839 Ribokinase (EC 2.7.1.15) 0.19 Ac3H11_613 Galactose-binding protein regulator low > 79
Rhizobium sp. OAE497 0.27 ABIE40_RS01880 ribokinase 0.28 ABIE40_RS19620 pca operon transcription factor PcaQ low > 107
Sinorhizobium meliloti 1021 0.27 SMc01103 Ribokinase (EC 2.7.1.15) (from data) 0.28 SM_b20580 LysR family transcriptional regulator low > 103
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.4302.1 Ribokinase (EC 2.7.1.15) 0.17 Xcc-8004.4253.1 Transcriptional regulator, LysR family low > 74
Phaeobacter inhibens DSM 17395 0.16 PGA1_c34980 putative pfkB family carbohydrate kinase 0.26 PGA1_c02580 putative HTH-type transcriptional regulator pcaQ low > 62

Not shown: 36 genomes with orthologs for b3752 only; 3 genomes with orthologs for b1422 only