Conservation of cofitness between Rru_A1438 and Rru_A0406 in Rhodospirillum rubrum S1H

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodospirillum rubrum S1H 1.0 Rru_A1438 Sigma-24 (FecI) (NCBI) 1.0 Rru_A0406 DNA repair protein RadA (NCBI) 0.75 5
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_2727 FIG006045: Sigma factor, ECF subfamily 0.45 PfGW456L13_1442 DNA repair protein RadA low > 87
Azospirillum brasilense Sp245 0.38 AZOBR_RS27315 RNA polymerase sigma 70 0.65 AZOBR_RS08320 DNA repair protein RadA low > 97
Azospirillum sp. SherDot2 0.37 MPMX19_03088 putative RNA polymerase sigma factor FecI 0.66 MPMX19_00904 DNA repair protein RadA low > 112
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis 0.45 Pf6N2E2_5076 DNA repair protein RadA low > 103
Pseudomonas simiae WCS417 0.29 PS417_17630 RNA polymerase sigma factor 0.45 PS417_24305 DNA repair protein RadA low > 88
Pseudomonas sp. RS175 0.29 PFR28_02867 putative RNA polymerase sigma factor FecI 0.45 PFR28_03792 DNA repair protein RadA low > 88
Pseudomonas fluorescens FW300-N1B4 0.29 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis 0.45 Pf1N1B4_2768 DNA repair protein RadA low > 87
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS19420 sigma-70 family RNA polymerase sigma factor 0.45 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens SBW25 0.28 PFLU_RS19420 sigma-70 family RNA polymerase sigma factor 0.45 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_22495 RNA polymerase subunit sigma-24 0.45 AO356_15680 DNA repair protein RadA low > 104
Variovorax sp. SCN45 0.28 GFF791 RNA polymerase sigma factor RpoE 0.46 GFF5087 DNA repair protein RadA low > 127
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS00640 sigma-70 family RNA polymerase sigma factor 0.43 ABZR86_RS08845 DNA repair protein RadA low > 74
Pectobacterium carotovorum WPP14 0.26 HER17_RS14055 sigma-70 family RNA polymerase sigma factor 0.40 HER17_RS19085 DNA repair protein RadA low > 75
Ralstonia solanacearum GMI1000 0.26 RS_RS14615 RNA polymerase sigma factor 0.41 RS_RS06880 DNA repair protein RadA low > 80
Ralstonia solanacearum UW163 0.26 UW163_RS06960 RNA polymerase sigma factor 0.42 UW163_RS13540 DNA repair protein RadA — —
Ralstonia solanacearum IBSBF1503 0.26 RALBFv3_RS06665 RNA polymerase sigma factor 0.42 RALBFv3_RS00210 DNA repair protein RadA low > 76
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_3549 RNA polymerase sigma factor, sigma-70 family 0.53 Ga0059261_0751 DNA repair protein RadA low > 68
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS09420 RNA polymerase sigma factor 0.44 LRK54_RS02525 DNA repair protein RadA low > 59
Dechlorosoma suillum PS 0.26 Dsui_1673 RNA polymerase sigma factor, sigma-70 family 0.41 Dsui_2413 DNA repair protein RadA — —
Ralstonia solanacearum PSI07 0.26 RPSI07_RS10560 RNA polymerase sigma factor 0.41 RPSI07_RS17270 DNA repair protein RadA low > 81
Cupriavidus basilensis FW507-4G11 0.24 RR42_RS14885 DNA-directed RNA polymerase sigma-70 factor 0.42 RR42_RS12030 DNA repair protein RadA — —
Agrobacterium fabrum C58 0.24 Atu3692 sigma factor 0.58 Atu1077 DNA repair protein 0.19 56
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_01187 RNA polymerase ECF-type sigma factor 0.53 CCNA_01732 DNA repair protein RadA low > 67
Caulobacter crescentus NA1000 0.24 CCNA_01187 RNA polymerase ECF-type sigma factor 0.53 CCNA_01732 DNA repair protein RadA low > 66
Hydrogenophaga sp. GW460-11-11-14-LB1 0.24 GFF1181 FIG006045: Sigma factor, ECF subfamily 0.43 GFF1833 DNA repair protein RadA low > 90
Rhodopseudomonas palustris CGA009 0.22 TX73_006850 RNA polymerase sigma factor 0.57 TX73_015980 DNA repair protein RadA low > 86
Pseudomonas stutzeri RCH2 0.22 Psest_4339 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 0.44 Psest_3401 DNA repair protein RadA low > 67
Phocaeicola vulgatus CL09T03C04 0.21 HMPREF1058_RS05630 RNA polymerase sigma-70 factor 0.40 HMPREF1058_RS14715 DNA repair protein RadA low > 67
Variovorax sp. OAS795 0.20 ABID97_RS21425 sigma-70 family RNA polymerase sigma factor 0.45 ABID97_RS03770 DNA repair protein RadA low > 91
Bacteroides thetaiotaomicron VPI-5482 0.20 BT4070 RNA polymerase ECF-type sigma factor (NCBI ptt file) 0.40 BT2406 putative DNA repair protein (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.19 HMPREF1181_RS02545 sigma-70 family RNA polymerase sigma factor 0.40 HMPREF1181_RS00075 DNA repair protein RadA low > 56
Bacteroides ovatus ATCC 8483 0.19 BACOVA_04866 RNA polymerase sigma-70 factor 0.39 BACOVA_03019 DNA repair protein RadA low > 94
Dickeya dadantii 3937 0.19 DDA3937_RS03525 sigma-70 family RNA polymerase sigma factor 0.41 DDA3937_RS02420 DNA repair protein RadA low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.19 CA265_RS21220 hypothetical protein 0.41 CA265_RS22660 DNA repair protein RadA low > 88
Rahnella sp. WP5 0.18 EX31_RS16485 sigma-70 family RNA polymerase sigma factor 0.43 EX31_RS04030 DNA repair protein RadA low > 89
Phocaeicola dorei CL03T12C01 0.18 ABI39_RS04680 RNA polymerase sigma factor 0.39 ABI39_RS10420 DNA repair protein RadA low > 72

Not shown: 0 genomes with orthologs for Rru_A1438 only; 65 genomes with orthologs for Rru_A0406 only