Conservation of cofitness between Rru_A0388 and Rru_A0086 in Rhodospirillum rubrum S1H

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodospirillum rubrum S1H 1.0 Rru_A0388 Protein of unknown function DUF6, transmembrane (NCBI) 1.0 Rru_A0086 Protein of unknown function DUF188 (NCBI) 0.48 18
Agrobacterium fabrum C58 0.63 Atu2334 hypothetical protein 0.42 Atu1478 hypothetical protein low > 89
Sinorhizobium meliloti 1021 0.62 SMc02511 hypothetical protein 0.47 SMc01271 hypothetical protein — —
Azospirillum sp. SherDot2 0.59 MPMX19_01772 putative inner membrane transporter YedA 0.49 MPMX19_00625 hypothetical protein low > 112
Bosea sp. OAE506 0.53 ABIE41_RS19715 EamA family transporter 0.56 ABIE41_RS11800 YaiI/YqxD family protein low > 77
Rhizobium sp. OAE497 0.31 ABIE40_RS01620 DMT family transporter 0.46 ABIE40_RS09875 YaiI/YqxD family protein low > 107
Dinoroseobacter shibae DFL-12 0.23 Dshi_1591 protein of unknown function DUF6 transmembrane (RefSeq) 0.44 Dshi_0110 protein of unknown function DUF188 (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.18 PGA1_c06570 putative integral membrane protein 0.46 PGA1_c31620 Uncharacterized protein conserved in bacteria low > 62
Rahnella sp. WP5 0.17 EX31_RS01385 EamA family transporter 0.33 EX31_RS20265 YaiI/YqxD family protein low > 89
Ralstonia solanacearum PSI07 0.17 RPSI07_RS12340 EamA/RhaT family transporter 0.34 RPSI07_RS06560 YaiI/YqxD family protein low > 81
Pseudomonas fluorescens FW300-N2C3 0.16 AO356_04290 multidrug DMT transporter permease 0.35 AO356_12870 hypothetical protein low > 104
Klebsiella michiganensis M5al 0.16 BWI76_RS18410 drug/metabolite exporter YedA 0.35 BWI76_RS06175 DUF188 domain-containing protein low > 92
Pseudomonas fluorescens SBW25 0.16 PFLU_RS22300 EamA family transporter 0.32 PFLU_RS29120 YaiI/YqxD family protein low > 109
Escherichia coli ECOR38 0.16 HEPCGN_03970 yedA drug/metabolite exporter YedA 0.33 HEPCGN_07245 yaiI YaiI/YqxD family protein low > 87
Pseudomonas fluorescens SBW25-INTG 0.16 PFLU_RS22300 EamA family transporter 0.32 PFLU_RS29120 YaiI/YqxD family protein low > 109
Dyella japonica UNC79MFTsu3.2 0.16 ABZR86_RS17100 DMT family transporter 0.36 ABZR86_RS00425 YaiI/YqxD family protein low > 74
Pseudomonas fluorescens FW300-N1B4 0.16 Pf1N1B4_3386 Permease of the drug/metabolite transporter (DMT) superfamily 0.35 Pf1N1B4_2203 probable P23 protein low > 87
Pseudomonas fluorescens FW300-N2E2 0.16 Pf6N2E2_2697 Permease of the drug/metabolite transporter (DMT) superfamily 0.35 Pf6N2E2_4448 probable P23 protein low > 103
Paraburkholderia graminis OAS925 0.15 ABIE53_002861 drug/metabolite transporter (DMT)-like permease 0.34 ABIE53_001465 uncharacterized protein YaiI (UPF0178 family) low > 113
Alteromonas macleodii MIT1002 0.15 MIT1002_03901 putative DMT superfamily transporter inner membrane protein 0.36 MIT1002_02273 hypothetical protein low > 70
Paraburkholderia sabiae LMG 24235 0.15 QEN71_RS05460 DMT family transporter 0.31 QEN71_RS38155 YaiI/YqxD family protein low > 153
Pseudomonas simiae WCS417 0.15 PS417_20590 multidrug DMT transporter permease 0.33 PS417_27460 hypothetical protein low > 88
Pseudomonas fluorescens GW456-L13 0.15 PfGW456L13_4469 Permease of the drug/metabolite transporter (DMT) superfamily 0.35 PfGW456L13_869 probable P23 protein low > 87
Lysobacter sp. OAE881 0.15 ABIE51_RS14840 DMT family transporter 0.32 ABIE51_RS09850 YaiI/YqxD family protein low > 62
Burkholderia phytofirmans PsJN 0.15 BPHYT_RS13240 multidrug DMT transporter permease 0.34 BPHYT_RS28065 hypothetical protein low > 109
Pseudomonas stutzeri RCH2 0.15 Psest_1856 Permeases of the drug/metabolite transporter (DMT) superfamily 0.36 Psest_3736 Uncharacterized protein conserved in bacteria low > 67
Escherichia coli ECRC62 0.15 BNILDI_15030 yedA drug/metabolite exporter YedA 0.33 BNILDI_22945 yaiI YaiI/YqxD family protein low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.15 GFF3998 Permease of the drug/metabolite transporter (DMT) superfamily 0.33 GFF4285 Protein YaiI low > 78
Escherichia coli ECRC100 0.14 OKFHMN_25610 yedA drug/metabolite exporter YedA 0.33 OKFHMN_08605 yaiI YaiI/YqxD family protein low > 80
Escherichia coli Nissle 1917 0.14 ECOLIN_RS11140 drug/metabolite exporter YedA 0.33 ECOLIN_RS02350 YaiI/YqxD family protein low > 55
Escherichia coli ECRC102 0.14 NIAGMN_02445 yedA drug/metabolite exporter YedA 0.33 NIAGMN_06660 yaiI YaiI/YqxD family protein — —
Escherichia coli ECOR27 0.14 NOLOHH_16240 yedA drug/metabolite exporter YedA 0.33 NOLOHH_01530 yaiI YaiI/YqxD family protein low > 75
Pseudomonas fluorescens FW300-N2E3 0.14 AO353_18215 multidrug DMT transporter permease 0.35 AO353_08910 hypothetical protein low > 101
Escherichia coli ECRC101 0.14 MCAODC_19785 yedA drug/metabolite exporter YedA 0.33 MCAODC_27830 yaiI YaiI/YqxD family protein low > 87
Escherichia coli ECRC98 0.14 JDDGAC_00195 yedA drug/metabolite exporter YedA 0.33 JDDGAC_12260 yaiI YaiI/YqxD family protein low > 86
Escherichia coli ECRC99 0.14 KEDOAH_02485 yedA drug/metabolite exporter YedA 0.33 KEDOAH_19360 yaiI YaiI/YqxD family protein — —
Escherichia fergusonii Becca 0.14 EFB2_01988 putative inner membrane transporter YedA 0.26 EFB2_03669 hypothetical protein low > 86
Escherichia coli BW25113 0.14 b1959 yedA predicted inner membrane protein (NCBI) 0.33 b0387 yaiI orf, hypothetical protein (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.14 OHPLBJKB_01769 putative inner membrane transporter YedA 0.33 OHPLBJKB_03287 hypothetical protein low > 73
Enterobacter sp. TBS_079 0.14 MPMX20_02955 putative inner membrane transporter YedA 0.33 MPMX20_00977 hypothetical protein low > 85
Pseudomonas putida KT2440 0.14 PP_4767 amino acid exporter for phenylalanine, threonine 0.33 PP_5221 conserved protein of unknown function, UPF0178 family low > 96
Vibrio cholerae E7946 ATCC 55056 0.14 CSW01_14465 EamA/RhaT family transporter 0.31 CSW01_04525 DUF188 domain-containing protein low > 62
Enterobacter asburiae PDN3 0.13 EX28DRAFT_0595 Predicted permease, DMT superfamily 0.33 EX28DRAFT_2584 Uncharacterized protein conserved in bacteria — —
Serratia liquefaciens MT49 0.12 IAI46_07395 drug/metabolite exporter YedA 0.35 IAI46_18550 YaiI/YqxD family protein low > 86
Rhodopseudomonas palustris CGA009 0.11 TX73_004175 DMT family transporter 0.53 TX73_011305 YaiI/YqxD family protein low > 86

Not shown: 17 genomes with orthologs for Rru_A0388 only; 25 genomes with orthologs for Rru_A0086 only