| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Azospirillum sp. SherDot2 | MPMX19_06421 | | hypothetical protein | insig. | 100 | 100 |
| | Azospirillum sp. SherDot2 | MPMX19_02256 | | Resolvase YneB | insig. | 48 | 38 |
| o | Castellaniella sp019104865 MT123 | ABCV34_RS11010 | | recombinase family protein | insig. | 23 | 94 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c25640 | | putative integrases/recombinase | insig. | 28 | 63 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS02005 | | recombinase family protein | insig. | 25 | 81 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0396 | | Recombinase (RefSeq) | insig. | 24 | 82 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS40435 | | recombinase family protein | no data | 28 | 62 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS44450 | | recombinase family protein | no data | 28 | 62 |
| o | Bosea sp. OAE506 | ABIE41_RS02045 | | recombinase family protein | insig. | 24 | 81 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS40090 | | recombinase family protein | insig. | 29 | 62 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3529 | | Site-specific recombinases, DNA invertase Pin homologs | insig. | 24 | 63 |
| | Mycobacterium tuberculosis H37Rv | Rv1586c | | Probable PhiRv1 integrase | insig. | 25 | 63 |
| o | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_4430 | | Site-specific recombinases, DNA invertase Pin homologs | insig. | 22 | 94 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS01755 | | recombinase family protein | insig. | 27 | 44 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS08835 | | recombinase family protein | insig. | 26 | 72 |
| | Ralstonia solanacearum GMI1000 | RS_RS16265 | | recombinase family protein | insig. | 24 | 72 |
| | Ralstonia solanacearum GMI1000 | RS_RS04440 | | recombinase family protein | insig. | 24 | 63 |
| | Sphingobium sp. HT1-2 | GFF3388 | | Mobile element protein | cofit | 39 | 25 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS06095 | | recombinase family protein | insig. | 25 | 63 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3138 | | Site-specific recombinases, DNA invertase Pin homologs | insig. | 24 | 62 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_19370 | | Site-specific DNA recombinase SpoIVCA/DNA invertase PinE | insig. | 39 | 25 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS01750 | | recombinase family protein | cofit | 25 | 71 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS20430 | | hypothetical protein | insig. | 23 | 64 |
| | Bosea sp. OAE506 | ABIE41_RS10840 | | recombinase family protein | insig. | 26 | 93 |
| | Ralstonia solanacearum UW163 | UW163_RS05205 | | recombinase family protein | insig. | 24 | 72 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_04373 | | Transposon Tn3 resolvase | no data | 35 | 26 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_00030 | | Transposon Tn1331 resolvase | no data | 35 | 26 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_02085 | | Transposon Tn1331 resolvase | no data | 35 | 26 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS08390 | | recombinase family protein | insig. | 26 | 71 |
| | Ralstonia solanacearum GMI1000 | RS_RS15930 | | recombinase family protein | insig. | 25 | 72 |
| | Pseudomonas stutzeri RCH2 | Psest_3156 | | Site-specific recombinases, DNA invertase Pin homologs | insig. | 33 | 28 |
| | Paraburkholderia graminis OAS925 | ABIE53_000503 | | DNA invertase Pin-like site-specific DNA recombinase | sig. | 37 | 25 |
| | Pseudomonas putida KT2440 | PP_5490 | | site-specific DNA recombinase | insig. | 35 | 27 |
| | Acinetobacter radioresistens SK82 | MPMX26_03181 | | DNA-invertase hin | insig. | 34 | 25 |
| | Acinetobacter radioresistens SK82 | MPMX26_03126 | | DNA-invertase hin | insig. | 34 | 25 |
| | Pseudomonas segetis P6 | MPMX49_02961 | | DNA-invertase hin | insig. | 37 | 18 |
| | Agrobacterium fabrum C58 | Atu6046 | | DNA invertase | insig. | 37 | 25 |
| | Escherichia coli ECRC100 | OKFHMN_09410 | pinE | site-specific DNA recombinase | cofit | 33 | 25 |
| | Escherichia coli ECRC98 | JDDGAC_13045 | pinE | site-specific DNA recombinase | insig. | 33 | 25 |
| | Shewanella sp. ANA-3 | Shewana3_4319 | | resolvase domain-containing protein (RefSeq) | insig. | 36 | 25 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_00315 | | Transposon Tn21 resolvase | insig. | 36 | 25 |
| | Escherichia coli ECRC101 | MCAODC_20820 | spoIVCA | DNA-invertase | insig. | 33 | 25 |
| | Azospirillum brasilense Sp245 | AZOBR_RS13460 | | putative resolvase | insig. | 24 | 70 |
| | Methanococcus maripaludis S2 | MMP_RS03990 | | recombinase family protein | insig. | 31 | 25 |
| | Escherichia coli BW25113 | b1158 | pin | e14 prophage; site-specific DNA recombinase (NCBI) | sig. | 29 | 34 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS12400 | | DUF1492 domain-containing protein | insig. | 32 | 28 |
| | Azospirillum sp. SherDot2 | MPMX19_06437 | | DNA-invertase hin | insig. | 35 | 25 |
| | Escherichia coli ECRC98 | JDDGAC_09160 | spoIVCA | DNA-invertase | strong | 33 | 25 |
| | Escherichia coli ECRC101 | MCAODC_00110 | pinE | site-specific DNA recombinase | insig. | 32 | 25 |
| | Escherichia coli ECRC102 | NIAGMN_07460 | pinE | site-specific DNA recombinase | insig. | 32 | 25 |
| | Escherichia coli ECOR38 | HEPCGN_26710 | spoIVCA | DNA-invertase | insig. | 29 | 35 |
| | Paraburkholderia graminis OAS925 | ABIE53_005590 | | DNA invertase Pin-like site-specific DNA recombinase | insig. | 30 | 44 |
| | Sinorhizobium meliloti 1021 | SMa0785 | | Recombinase | no data | 27 | 71 |
| | Sinorhizobium meliloti 1021 | SMc02300 | | transposase number 4 for insertion sequence ISRM30 | no data | 27 | 71 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1345 | | Site-specific recombinases, DNA invertase Pin homologs | insig. | 24 | 63 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_4088 | | Site-specific recombinases, DNA invertase Pin homologs | no data | 22 | 43 |
| | Escherichia fergusonii Becca | EFB2_03222 | | DNA-invertase hin | insig. | 33 | 25 |
| | Alteromonas macleodii MIT1002 | MIT1002_02482 | | DNA-invertase hin | insig. | 31 | 25 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_4181 | | Site-specific recombinases, DNA invertase Pin homologs | no data | 22 | 43 |
| | Pseudomonas stutzeri RCH2 | Psest_4383 | | Site-specific recombinases, DNA invertase Pin homologs | sig. | 34 | 24 |
| | Escherichia coli ECRC98 | JDDGAC_05745 | spoIVCA | Hin recombinase | insig. | 32 | 25 |
| | Paraburkholderia graminis OAS925 | ABIE53_000504 | | DNA invertase Pin-like site-specific DNA recombinase | sig. | 33 | 26 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_18145 | | resolvase | cofit | 29 | 28 |
| | Dinoroseobacter shibae DFL-12 | Dshi_4026 | | Resolvase domain (RefSeq) | insig. | 38 | 18 |
| | Azospirillum sp. SherDot2 | MPMX19_06322 | | hypothetical protein | insig. | 34 | 24 |
| | Azospirillum sp. SherDot2 | MPMX19_01313 | | DNA-invertase hin | insig. | 36 | 18 |
| | Sphingobium sp. HT1-2 | GFF845 | | RlgA | cofit | 30 | 35 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3136 | | Site-specific recombinases, DNA invertase Pin homologs | insig. | 22 | 62 |
| | Sphingobium sp. HT1-2 | GFF5286 | | hypothetical protein | cofit | 33 | 25 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3853 | | Resolvase domain (RefSeq) | insig. | 38 | 17 |
| | Dinoroseobacter shibae DFL-12 | Dshi_4105 | | Resolvase domain (RefSeq) | insig. | 37 | 18 |
| | Escherichia coli ECOR38 | HEPCGN_04245 | | DNA-invertase | insig. | 31 | 25 |
| | Azospirillum sp. SherDot2 | MPMX19_01561 | | DNA-invertase hin | insig. | 32 | 25 |
| | Escherichia fergusonii Becca | EFB2_03773 | | DNA-invertase hin | insig. | 31 | 25 |
| | Bosea sp. OAE506 | ABIE41_RS17450 | | recombinase family protein | insig. | 25 | 43 |
| | Azospirillum sp. SherDot2 | MPMX19_06678 | | hypothetical protein | no data | 32 | 25 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS07305 | | recombinase family protein | insig. | 20 | 83 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1928 | | Site-specific recombinases, DNA invertase Pin homologs | insig. | 24 | 44 |
| | Azospirillum brasilense Sp245 | AZOBR_RS27370 | | resolvase | no data | 36 | 18 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3748 | | Resolvase domain (RefSeq) | insig. | 38 | 17 |
| | Escherichia coli BL21 | ECD_01345 | | Rac prophage; putative site-specific recombinase | no data | 32 | 25 |
| | Escherichia coli BL21 | ECD_01504 | | Qin prophage; putative site-specific recombinase | no data | 32 | 25 |
| | Escherichia coli ECOR27 | NOLOHH_18610 | pinR | Serine recombinase PinR | cofit | 32 | 25 |
| | Escherichia coli BW25113 | b1374 | pinR | Rac prophage; predicted site-specific recombinase (NCBI) | no data | 32 | 25 |
| | Escherichia coli BW25113 | b1545 | pinQ | Qin prophage; predicted site-specific recombinase (NCBI) | insig. | 32 | 25 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS20345 | | recombinase family protein | cofit | 32 | 25 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3680 | | Resolvase domain (RefSeq) | no data | 32 | 23 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3876 | | Resolvase domain (RefSeq) | no data | 32 | 23 |
| | Dinoroseobacter shibae DFL-12 | Dshi_4081 | | Resolvase domain (RefSeq) | no data | 32 | 23 |
| | Pseudomonas segetis P6 | MPMX49_00193 | | DNA-invertase hin | insig. | 33 | 22 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2727 | | Recombinase (RefSeq) | insig. | 22 | 62 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_0960 | | Site-specific recombinases, DNA invertase Pin homologs | insig. | 30 | 27 |
| | Fusobacterium nucleatum SB010 | HUW76_02900 | | recombinase family protein | cofit | 29 | 25 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_04810 | | recombinase family protein | no data | 33 | 19 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_09975 | | recombinase family protein | no data | 33 | 19 |
| | Escherichia coli ECOR27 | NOLOHH_15375 | | recombinase family protein | insig. | 28 | 40 |
| | Dechlorosoma suillum PS | Dsui_0771 | | site-specific recombinase, DNA invertase Pin | insig. | 34 | 25 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02167 | | Tn3 family transposase ISYps3 | cofit | 31 | 25 |
| | Variovorax sp. SCN45 | GFF7081 | | Mobile element protein | no data | 33 | 19 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS15555 | | recombinase family protein | insig. | 32 | 26 |