Homologs of HMPREF1078_RS00925 from Parabacteroides merdae CL09T00C40

UpxY family transcription antiterminator

76 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00925 UpxY family transcription antiterminator strong 100 100
o Cellulophaga baltica 18 M666_RS03405 UpxY family transcription antiterminator cofit 37 89
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4415 Transcription antiterminator strong 35 88
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS14250 UpxY family transcription antiterminator insig. 35 85
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS07905 antitermination protein NusG insig. 32 86
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS08980 UpxY family transcription antiterminator strong 31 86
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS01815 antitermination protein NusG cofit 33 85
  Bacteroides stercoris CC31F HMPREF1181_RS03935 UpxY family transcription antiterminator cofit 29 88
  Bacteroides thetaiotaomicron VPI-5482 BT2886 putative transcriptional regulator (NCBI ptt file) sig. 28 86
  Bacteroides ovatus ATCC 8483 BACOVA_01723 transcription termination/antitermination factor NusG insig. 28 89
  Herbaspirillum seropedicae SmR1 HSERO_RS02425 transcriptional activator strong 28 71
  Bacteroides ovatus ATCC 8483 BACOVA_05504 transcription termination/antitermination factor NusG insig. 28 89
  Bacteroides thetaiotaomicron VPI-5482 BT0596 putative transcriptional regulator (NCBI ptt file) insig. 27 89
  Bacteroides thetaiotaomicron VPI-5482 BT0376 putative transcriptional regulator (NCBI ptt file) insig. 28 86
  Phocaeicola dorei CL03T12C01 ABI39_RS13390 UpxY family transcription antiterminator insig. 26 92
  Bacteroides ovatus ATCC 8483 BACOVA_00196 transcription termination/antitermination factor NusG sig. 27 89
  Bacteroides ovatus ATCC 8483 BACOVA_02457 transcription termination/antitermination factor NusG cofit 26 85
  Castellaniella sp019104865 MT123 ABCV34_RS12845 transcription termination/antitermination NusG family protein insig. 26 89
  Bacteroides ovatus ATCC 8483 BACOVA_03746 transcription termination/antitermination factor NusG insig. 26 85
  Bacteroides ovatus ATCC 8483 BACOVA_03690 transcription termination/antitermination factor NusG strong 26 86
  Bacteroides thetaiotaomicron VPI-5482 BT1358 putative transcriptional regulator (NCBI ptt file) strong 26 82
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS17370 UpxY family transcription antiterminator sig. 25 92
  Bacteroides ovatus ATCC 8483 BACOVA_00023 transcription termination/antitermination factor NusG no data 28 71
  Magnetospirillum magneticum AMB-1 AMB_RS00245 transcriptional activator RfaH insig. 29 86
  Shewanella sp. ANA-3 Shewana3_1374 transcription antitermination protein nusG (RefSeq) strong 26 90
  Bacteroides thetaiotaomicron VPI-5482 BT1725 putative transcriptional regulator (NCBI ptt file) no data 26 89
  Bacteroides thetaiotaomicron VPI-5482 BT1656 putative transcriptional regulator (NCBI ptt file) sig. 25 89
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_5950 Transcriptional activator RfaH no data 27 63
  Pseudomonas stutzeri RCH2 Psest_2605 transcriptional activator RfaH sig. 24 73
  Shewanella oneidensis MR-1 SO3194 transcriptional activator rfaH, putative (NCBI ptt file) strong 29 69
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS23940 rfaH transcription/translation regulatory transformer protein RfaH insig. 32 70
  Erwinia amylovora T8 OLJFJH_06535 transcription/translation regulatory transformer protein RfaH strong 31 69
  Kangiella aquimarina DSM 16071 B158DRAFT_2343 transcriptional activator RfaH strong 25 89
  Pseudomonas sp. FW215-L2 GFF4292 Transcription antitermination protein RfaH insig. 23 96
  Pseudomonas syringae pv. syringae B728a Psyr_3226 Transcriptional activator RfaH insig. 32 56
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3226 Transcriptional activator RfaH insig. 32 56
  Escherichia coli BL21 ECD_03733 transcription antitermination protein strong 29 69
  Escherichia coli ECOR27 NOLOHH_06395 rfaH transcription/translation regulatory transformer protein RfaH strong 29 69
  Escherichia coli ECOR38 HEPCGN_12895 rfaH transcription/translation regulatory transformer protein RfaH strong 29 69
  Escherichia coli ECRC100 OKFHMN_14265 rfaH transcription/translation regulatory transformer protein RfaH cofit 29 69
  Escherichia coli ECRC101 MCAODC_04770 rfaH transcription/translation regulatory transformer protein RfaH strong 29 69
  Escherichia coli ECRC102 NIAGMN_12020 rfaH transcription/translation regulatory transformer protein RfaH strong 29 69
  Escherichia coli ECRC62 BNILDI_05135 rfaH transcription/translation regulatory transformer protein RfaH strong 29 69
  Escherichia coli ECRC98 JDDGAC_17890 rfaH transcription/translation regulatory transformer protein RfaH strong 29 69
  Escherichia coli ECRC99 KEDOAH_13885 rfaH transcription/translation regulatory transformer protein RfaH no data 29 69
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04211 Transcription antitermination protein RfaH strong 29 69
  Escherichia coli BW25113 b3842 rfaH transcriptional activator RfaH (NCBI) strong 29 69
  Erwinia tracheiphila SCR3 LU632_RS23970 rfaH transcription/translation regulatory transformer protein RfaH strong 30 69
  Shewanella amazonensis SB2B Sama_2265 transcriptional activator rfaH, putative (RefSeq) strong 30 68
  Marinobacter adhaerens HP15 HP15_2404 transcriptional activator RfaH strong 37 44
  Escherichia fergusonii Becca EFB2_04775 Transcription antitermination protein RfaH strong 28 69
  Escherichia coli Nissle 1917 ECOLIN_RS22150 transcription/translation regulatory transformer protein RfaH strong 28 69
  Collimonas humicola GW821-FHT01A05 MPMX01_03810 Transcription antitermination protein RfaH insig. 26 75
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_08615 rfaH transcription/translation regulatory transformer protein RfaH cofit 30 69
  Bacteroides stercoris CC31F HMPREF1181_RS04120 UpxY family transcription antiterminator strong 37 35
  Shewanella loihica PV-4 Shew_1398 NusG antitermination factor (RefSeq) strong 26 72
  Serratia liquefaciens MT49 IAI46_01105 transcription/translation regulatory transformer protein RfaH strong 28 69
  Serratia liquefaciens MT49 IAI46_22800 hypothetical protein insig. 33 55
  Pseudomonas sp. DMC3 GFF3566 Transcription antitermination protein RfaH no data 25 85
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF267 Transcriptional activator RfaH strong 27 69
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_15910 Transcriptional antiterminator NusG cofit 32 55
  Erwinia tracheiphila SCR3 LU632_RS25785 transcriptional antiterminator NusG insig. 32 55
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS18500 rfaH transcription/translation regulatory transformer protein RfaH no data 28 69
  Agrobacterium fabrum C58 Atu0450 transcription antitermination protein strong 25 94
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02604 Transcription antitermination protein RfaH cofit 26 72
  Dickeya dianthicola 67-19 HGI48_RS00935 transcription/translation regulatory transformer protein RfaH strong 29 69
  Dickeya dianthicola ME23 DZA65_RS00995 transcription/translation regulatory transformer protein RfaH cofit 29 69
  Pantoea sp. MT58 IAI47_18250 transcription/translation regulatory transformer protein RfaH strong 28 69
  Klebsiella pneumoniae MKP103 KDGMDA_09835 transcription/translation regulatory transformer protein RfaH strong 25 69
  Klebsiella pneumoniae MRSN742743 GJGHJB_04799 rfaH transcription/translation regulatory transformer protein RfaH strong 25 69
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_5081 Transcriptional activator RfaH no data 27 92
  Klebsiella michiganensis M5al BWI76_RS01340 transcription/translation regulatory transformer protein RfaH no data 25 69
  Enterobacter asburiae PDN3 EX28DRAFT_4505 transcription elongation factor/antiterminator RfaH cofit 29 49
  Enterobacter sp. TBS_079 MPMX20_04440 Transcription antitermination protein RfaH strong 29 49
  Dickeya dadantii 3937 DDA3937_RS20290 transcription/translation regulatory transformer protein RfaH strong 28 69
  Pectobacterium carotovorum WPP14 HER17_RS20570 transcription/translation regulatory transformer protein RfaH strong 28 68