Homologs of HMPREF1078_RS00925 from Parabacteroides merdae CL09T00C40

UpxY family transcription antiterminator

65 hits from BLASTp (E < 0.01)

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Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Parabacteroides merdae CL09T00C40	HMPREF1078_RS00925		UpxY family transcription antiterminator	strong	100	100
o	Echinicola vietnamensis KMM 6221, DSM 17526	Echvi_4415		Transcription antiterminator	strong	35	88
	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS14250		UpxY family transcription antiterminator	insig.	35	85
o	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS07905		antitermination protein NusG	insig.	32	86
	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS08980		UpxY family transcription antiterminator	insig.	31	86
	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS01815		antitermination protein NusG	cofit	33	85
	Bacteroides stercoris CC31F	HMPREF1181_RS03935		UpxY family transcription antiterminator	cofit	29	88
o	Bacteroides thetaiotaomicron VPI-5482	BT2886		putative transcriptional regulator (NCBI ptt file)	sig.	28	86
o	Bacteroides ovatus ATCC 8483	BACOVA_01723		transcription termination/antitermination factor NusG	insig.	28	89
	Herbaspirillum seropedicae SmR1	HSERO_RS02425		transcriptional activator	strong	28	71
	Bacteroides ovatus ATCC 8483	BACOVA_05504		transcription termination/antitermination factor NusG	insig.	28	89
	Bacteroides thetaiotaomicron VPI-5482	BT0596		putative transcriptional regulator (NCBI ptt file)	insig.	27	89
	Bacteroides thetaiotaomicron VPI-5482	BT0376		putative transcriptional regulator (NCBI ptt file)	insig.	28	86
o	Phocaeicola dorei CL03T12C01	ABI39_RS13390		UpxY family transcription antiterminator	insig.	26	92
	Bacteroides ovatus ATCC 8483	BACOVA_00196		transcription termination/antitermination factor NusG	sig.	27	89
	Bacteroides ovatus ATCC 8483	BACOVA_02457		transcription termination/antitermination factor NusG	insig.	26	85
	Bacteroides thetaiotaomicron VPI-5482	BT1358		putative transcriptional regulator (NCBI ptt file)	strong	26	82
o	Castellaniella sp019104865 MT123	ABCV34_RS12845		transcription termination/antitermination NusG family protein	insig.	26	89
	Bacteroides ovatus ATCC 8483	BACOVA_03746		transcription termination/antitermination factor NusG	insig.	26	85
	Bacteroides ovatus ATCC 8483	BACOVA_03690		transcription termination/antitermination factor NusG	strong	26	86
o	Phocaeicola vulgatus CL09T03C04	HMPREF1058_RS17370		UpxY family transcription antiterminator	sig.	25	92
	Bacteroides ovatus ATCC 8483	BACOVA_00023		transcription termination/antitermination factor NusG	no data	28	71
o	Magnetospirillum magneticum AMB-1	AMB_RS00245		transcriptional activator RfaH	insig.	29	86
o	Shewanella sp. ANA-3	Shewana3_1374		transcription antitermination protein nusG (RefSeq)	strong	26	90
	Bacteroides thetaiotaomicron VPI-5482	BT1725		putative transcriptional regulator (NCBI ptt file)	no data	26	89
	Bacteroides thetaiotaomicron VPI-5482	BT1656		putative transcriptional regulator (NCBI ptt file)	sig.	25	89
	Pseudomonas stutzeri RCH2	Psest_2605		transcriptional activator RfaH	sig.	24	73
	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_5950		Transcriptional activator RfaH	no data	27	63
	Shewanella oneidensis MR-1	SO3194		transcriptional activator rfaH, putative (NCBI ptt file)	strong	29	69
o	Kangiella aquimarina DSM 16071	B158DRAFT_2343		transcriptional activator RfaH	strong	25	89
	Escherichia coli BL21	ECD_03733		transcription antitermination protein	strong	29	69
	Escherichia coli ECOR27	NOLOHH_06395	rfaH	transcription/translation regulatory transformer protein RfaH	strong	29	69
	Escherichia coli ECOR38	HEPCGN_12895	rfaH	transcription/translation regulatory transformer protein RfaH	strong	29	69
	Escherichia coli ECRC101	OKFHMN_14265	rfaH	transcription/translation regulatory transformer protein RfaH	insig.	29	69
	Escherichia coli ECRC101	MCAODC_04770	rfaH	transcription/translation regulatory transformer protein RfaH	sig.	29	69
	Escherichia coli ECRC102	NIAGMN_12020	rfaH	transcription/translation regulatory transformer protein RfaH	strong	29	69
	Escherichia coli ECRC62	BNILDI_05135	rfaH	transcription/translation regulatory transformer protein RfaH	strong	29	69
	Escherichia coli ECRC98	JDDGAC_17890	rfaH	transcription/translation regulatory transformer protein RfaH	no data	29	69
	Escherichia coli ECRC99	KEDOAH_13885	rfaH	transcription/translation regulatory transformer protein RfaH	no data	29	69
	Escherichia coli HS(pFamp)R (ATCC 700891)	OHPLBJKB_04211		Transcription antitermination protein RfaH	cofit	29	69
	Escherichia coli BW25113	b3842	rfaH	transcriptional activator RfaH (NCBI)	strong	29	69
	Pseudomonas syringae pv. syringae B728a	Psyr_3226		Transcriptional activator RfaH	insig.	32	56
	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_3226		Transcriptional activator RfaH	insig.	32	56
	Erwinia tracheiphila SCR3	LU632_RS23970	rfaH	transcription/translation regulatory transformer protein RfaH	strong	30	69
	Shewanella amazonensis SB2B	Sama_2265		transcriptional activator rfaH, putative (RefSeq)	strong	30	68
	Marinobacter adhaerens HP15	HP15_2404		transcriptional activator RfaH	strong	37	44
	Escherichia fergusonii Becca	EFB2_04775		Transcription antitermination protein RfaH	strong	28	69
	Escherichia coli Nissle 1917	ECOLIN_RS22150		transcription/translation regulatory transformer protein RfaH	strong	28	69
	Bacteroides stercoris CC31F	HMPREF1181_RS04120		UpxY family transcription antiterminator	strong	37	35
	Shewanella loihica PV-4	Shew_1398		NusG antitermination factor (RefSeq)	strong	26	72
	Serratia liquefaciens MT49	IAI46_01105		transcription/translation regulatory transformer protein RfaH	insig.	28	69
	Serratia liquefaciens MT49	IAI46_22800		hypothetical protein	insig.	33	55
	Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868	GFF267		Transcriptional activator RfaH	strong	27	69
	Erwinia tracheiphila SCR3	LU632_RS25785		transcriptional antiterminator NusG	insig.	32	55
	Agrobacterium fabrum C58	Atu0450		transcription antitermination protein	strong	25	94
	Dickeya dianthicola 67-19	HGI48_RS00935		transcription/translation regulatory transformer protein RfaH	strong	29	69
	Dickeya dianthicola ME23	DZA65_RS00995		transcription/translation regulatory transformer protein RfaH	cofit	29	69
	Pantoea sp. MT58	IAI47_18250		transcription/translation regulatory transformer protein RfaH	strong	28	69
	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_5081		Transcriptional activator RfaH	no data	27	92
	Klebsiella michiganensis M5al	BWI76_RS01340		transcription/translation regulatory transformer protein RfaH	no data	25	69
	Enterobacter asburiae PDN3	EX28DRAFT_4505		transcription elongation factor/antiterminator RfaH	cofit	29	49
	Enterobacter sp. TBS_079	MPMX20_04440		Transcription antitermination protein RfaH	strong	29	49
	Dickeya dadantii 3937	DDA3937_RS20290		transcription/translation regulatory transformer protein RfaH	strong	28	69
	Pectobacterium carotovorum WPP14	HER17_RS20570		transcription/translation regulatory transformer protein RfaH	strong	28	68
	Vibrio cholerae E7946 ATCC 55056	CSW01_05050		transcription/translation regulatory transformer protein RfaH	insig.	23	86