Homologs of GFF4261 from Variovorax sp. SCN45

RNA polymerase ECF-type sigma factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF4261 RNA polymerase ECF-type sigma factor insig. 100 100
  Variovorax sp. SCN45 GFF1525 RNA polymerase ECF-type sigma factor insig. 49 86
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1181 FIG006045: Sigma factor, ECF subfamily insig. 47 85
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 42 87
o Pseudomonas sp. RS175 PFR28_02867 putative RNA polymerase sigma factor FecI insig. 42 86
o Pseudomonas sp. DMC3 GFF759 putative RNA polymerase sigma factor FecI insig. 41 87
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 42 87
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 42 85
o Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 41 87
o Pseudomonas orientalis W4I3 QF045_RS19140 sigma-70 family RNA polymerase sigma factor insig. 42 85
o Pseudomonas simiae WCS417 PS417_17630 RNA polymerase sigma factor insig. 39 88
o Pseudomonas fluorescens SBW25 PFLU_RS19420 sigma-70 family RNA polymerase sigma factor insig. 39 85
o Pseudomonas fluorescens SBW25-INTG PFLU_RS19420 sigma-70 family RNA polymerase sigma factor strong 39 85
  Pseudomonas sp. SVBP6 COO64_RS18805 sigma-70 family RNA polymerase sigma factor insig. 41 83
  Pseudomonas putida KT2440 PP_4208 RNA polymerase sigma-70 factor, ECF subfamily strong 40 85
  Pseudomonas aeruginosa MRSN321 DY961_RS18835 RNA polymerase sigma factor sig. 40 83
  Pseudomonas aeruginosa PA14 IKLFDK_06170 RNA polymerase subunit sigma no data 40 83
  Pseudomonas aeruginosa PUPa3 DQ20_RS52975 RNA polymerase sigma factor insig. 40 83
  Variovorax sp. SCN45 GFF2440 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 38 84
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 38 85
  Pseudomonas sp. SVBP6 COO64_RS16360 RNA polymerase sigma factor sig. 35 89
  Pseudomonas sp. BP01 JOY50_RS18970 sigma-70 family RNA polymerase sigma factor insig. 38 85
  Pseudomonas orientalis W4I3 QF045_RS09635 RNA polymerase sigma factor insig. 35 83
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 38 85
  Pseudomonas simiae WCS417 PS417_06880 RNA polymerase sigma factor insig. 35 83
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2440 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 37 79
  Pseudomonas simiae WCS417 PS417_09740 RNA polymerase subunit sigma-24 insig. 35 79
  Pseudomonas fluorescens SBW25 PFLU_RS06940 sigma-70 family RNA polymerase sigma factor insig. 35 83
  Pseudomonas fluorescens SBW25-INTG PFLU_RS06940 sigma-70 family RNA polymerase sigma factor sig. 35 83
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01536 hypothetical protein cofit 36 82
  Pseudomonas aeruginosa MRSN321 DY961_RS18335 fpvI;inference=COORDINATES pyoverdine signaling pathway sigma factor FpvI insig. 38 85
  Pseudomonas aeruginosa PA14 IKLFDK_11700 pyoverdine signaling pathway sigma factor FpvI sig. 38 85
  Pseudomonas aeruginosa PUPa3 DQ20_RS59570 fpvI;inference=COORDINATES pyoverdine signaling pathway sigma factor FpvI insig. 38 85
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_118 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 36 79
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09455 RNA polymerase sigma factor insig. 39 78
  Pseudomonas sp. RS175 PFR28_02859 putative RNA polymerase sigma factor FecI insig. 36 79
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_29 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 36 79
  Pseudomonas fluorescens FW300-N2C3 AO356_21215 RNA polymerase subunit sigma-24 insig. 36 79
  Pseudomonas sp. DMC3 GFF1353 putative RNA polymerase sigma factor FecI cofit 34 89
  Acinetobacter baumannii LAC-4 RR41_RS08490 sigma-70 family RNA polymerase sigma factor strong 32 84
  Pseudomonas sp. BP01 JOY50_RS12755 sigma-70 family RNA polymerase sigma factor insig. 32 85
  Pseudomonas orientalis W4I3 QF045_RS12270 sigma-70 family RNA polymerase sigma factor insig. 34 80
  Pseudomonas sp. SVBP6 COO64_RS04025 sigma-70 family RNA polymerase sigma factor insig. 34 79
  Pseudomonas sp. BP01 JOY50_RS22705 RNA polymerase sigma factor insig. 35 79
  Pseudomonas putida KT2440 PP_0865 ECF subfamily RNA polymerase sigma-24 factor insig. 34 79
  Dechlorosoma suillum PS Dsui_2948 RNA polymerase sigma factor, sigma-70 family insig. 34 83
  Klebsiella pneumoniae MKP103 KDGMDA_00205 RNA polymerase sigma factor FecI insig. 36 80
  Variovorax sp. SCN45 GFF4658 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 34 85
  Dechlorosoma suillum PS Dsui_0621 RNA polymerase sigma factor, sigma-70 family insig. 32 86
  Rhodopseudomonas palustris CGA009 TX73_016965 RNA polymerase sigma factor insig. 39 83
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 29 83
  Dechlorosoma suillum PS Dsui_1673 RNA polymerase sigma factor, sigma-70 family no data 35 81
  Escherichia coli BL21 ECD_04159 RNA polymerase sigma-19 factor, fec operon-specific; ECF sigma factor insig. 34 80
  Escherichia coli ECOR38 HEPCGN_09830 fecI RNA polymerase sigma factor FecI insig. 34 80
  Escherichia coli Nissle 1917 ECOLIN_RS25750 RNA polymerase sigma factor FecI insig. 34 80
  Escherichia coli BW25113 b4293 fecI KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) strong 34 80
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2098 heme uptake regulator insig. 33 89
  Pseudomonas fluorescens FW300-N2C3 AO356_21710 RNA polymerase subunit sigma insig. 32 89
  Cupriavidus basilensis FW507-4G11 RR42_RS31145 RNA polymerase sigma factor insig. 35 80
  Pseudomonas sp. BP01 JOY50_RS12920 RNA polymerase sigma factor insig. 31 82
  Pseudomonas sp. RS175 PFR28_02540 putative RNA polymerase sigma factor FecI insig. 31 84
  Pseudomonas aeruginosa MRSN321 DY961_RS15880 RNA polymerase sigma factor sig. 36 82
  Pseudomonas aeruginosa PA14 IKLFDK_17505 RNA polymerase subunit sigma-70 insig. 36 82
  Pseudomonas aeruginosa PUPa3 DQ20_RS41200 RNA polymerase sigma factor insig. 36 82
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3565 heme uptake regulator insig. 32 83
  Pseudomonas sp. BP01 JOY50_RS26335 sigma-70 family RNA polymerase sigma factor insig. 31 86
  Pseudomonas sp. BP01 JOY50_RS22945 sigma-70 family RNA polymerase sigma factor insig. 31 84
  Pseudomonas simiae WCS417 PS417_00670 RNA polymerase sigma factor sig. 35 80
  Pseudomonas sp. BP01 JOY50_RS12990 sigma-70 family RNA polymerase sigma factor insig. 32 80
  Pseudomonas sp. BP01 JOY50_RS01650 sigma-70 family RNA polymerase sigma factor insig. 35 86
  Pseudomonas simiae WCS417 PS417_09655 RNA polymerase sigma factor insig. 35 80
  Pseudomonas sp. DMC3 GFF2767 putative RNA polymerase sigma factor FecI insig. 33 79
  Ralstonia sp. UNC404CL21Col ABZR87_RS12845 sigma-70 family RNA polymerase sigma factor strong 32 86
  Pseudomonas fluorescens SBW25 PFLU_RS05170 sigma-70 family RNA polymerase sigma factor insig. 31 84
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05170 sigma-70 family RNA polymerase sigma factor strong 31 84
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09360 RNA polymerase sigma factor insig. 38 77
  Klebsiella michiganensis M5al BWI76_RS11395 RNA polymerase sigma factor FecI strong 31 84
  Pseudomonas segetis P6 ACVTMO_RS03680 sigma-70 family RNA polymerase sigma factor insig. 34 81
  Pseudomonas fluorescens FW300-N2C3 AO356_22495 RNA polymerase subunit sigma-24 insig. 30 84
  Pseudomonas putida KT2440 PP_0352 RNA polymerase sigma-70 factor, ECF subfamily sig. 33 84
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_398 FIG006045: Sigma factor, ECF subfamily insig. 30 84
  Pseudomonas putida KT2440 PP_2192 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein insig. 29 85
  Serratia liquefaciens MT49 IAI46_11745 sigma-70 family RNA polymerase sigma factor no data 35 72
  Dechlorosoma suillum PS Dsui_2977 RNA polymerase sigma factor, sigma-70 family insig. 33 84
  Pseudomonas putida KT2440 PP_0704 RNA polymerase sigma-70 factor, ECF subfamily strong 36 72
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0584 RNA polymerase sigma factor, sigma-70 family insig. 36 69
  Ralstonia solanacearum GMI1000 RS_RS14615 RNA polymerase sigma factor insig. 34 84
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12435 hypothetical protein insig. 32 83
  Pseudomonas sp. BP01 JOY50_RS02475 sigma-70 family RNA polymerase sigma factor no data 33 83
  Variovorax sp. SCN45 GFF1524 FIG006045: Sigma factor, ECF subfamily insig. 29 87
  Pseudomonas sp. BP01 JOY50_RS17880 RNA polymerase sigma factor insig. 32 84
  Pseudomonas orientalis W4I3 QF045_RS08085 sigma-70 family RNA polymerase sigma factor insig. 30 84
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5307 FIG006045: Sigma factor, ECF subfamily strong 31 84
  Pseudomonas sp. RS175 PFR28_00037 putative RNA polymerase sigma factor FecI insig. 32 84
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS21465 RNA polymerase sigma factor insig. 32 93
  Ralstonia solanacearum UW163 UW163_RS17725 RNA polymerase sigma factor insig. 32 93
  Pseudomonas fluorescens FW300-N2C3 AO356_16910 RNA polymerase subunit sigma insig. 30 84
  Pseudomonas syringae pv. syringae B728a Psyr_1040 RNA polymerase sigma factor, ECF subfamily strong 32 80
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1040 RNA polymerase sigma factor, ECF subfamily insig. 32 80
  Ralstonia solanacearum PSI07 RPSI07_RS10560 RNA polymerase sigma factor insig. 32 84