Homologs of GFF4166 from Sphingobium sp. HT1-2

Ribosome hibernation promoting factor Hpf
SEED: Ribosomal subunit interface protein

60 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF4166 Ribosome hibernation promoting factor Hpf cofit 100 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2191 ribosomal subunit interface protein strong 65 99
o Rhodopseudomonas palustris CGA009 TX73_000265 ribosome-associated translation inhibitor RaiA cofit 40 99
o Rhizobium sp. OAE497 ABIE40_RS01865 ribosome-associated translation inhibitor RaiA sig. 39 98
o Agrobacterium fabrum C58 Atu0331 sigma-54 modulation protein strong 39 98
o Sinorhizobium meliloti 1021 SMc01140 SIGMA54 modulation protein no data 38 98
o Phaeobacter inhibens DSM 17395 PGA1_c35970 putative sigma(54) modulation protein sig. 37 99
o Dinoroseobacter shibae DFL-12 Dshi_3583 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) sig. 37 99
o Azospirillum sp. SherDot2 MPMX19_02669 Ribosome hibernation promotion factor no data 40 99
o Azospirillum brasilense Sp245 AZOBR_RS18875 ribose ABC transporter permease strong 39 99
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS16080 ribosome-associated translation inhibitor RaiA insig. 35 99
o Xanthobacter sp. DMC5 GFF3924 Ribosome hibernation promotion factor insig. 34 99
o Bosea sp. OAE506 ABIE41_RS00120 ribosome-associated translation inhibitor RaiA insig. 39 99
o Caulobacter crescentus NA1000 CCNA_03711 ribosome-associated factor Y strong 37 99
o Caulobacter crescentus NA1000 Δfur CCNA_03711 ribosome-associated factor Y cofit 37 99
o Synechococcus elongatus PCC 7942 Synpcc7942_2352 lrtA sigma 54 modulation protein / SSU ribosomal protein S30P insig. 25 99
  Desulfovibrio vulgaris Miyazaki F DvMF_0426 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) insig. 24 99
  Desulfovibrio vulgaris Hildenborough JW710 DVU1629 yfiA ribosomal subunit interface protein (TIGR) strong 24 99
  Fusobacterium nucleatum SB010 HUW76_07850 ribosome-associated translation inhibitor RaiA strong 22 98
  Synechocystis sp000284455 PCC 6803 SGL_RS12505 ribosome-associated translation inhibitor RaiA cofit 21 99
  Escherichia coli BL21 ECD_02486 cold shock protein associated with 30S ribosomal subunit insig. 27 47
  Escherichia fergusonii Becca EFB2_01294 Ribosome-associated inhibitor A insig. 27 47
  Escherichia coli ECOR27 NOLOHH_12910 raiA ribosome-associated translation inhibitor RaiA insig. 27 47
  Escherichia coli ECOR38 HEPCGN_20355 raiA ribosome-associated translation inhibitor RaiA insig. 27 47
  Escherichia coli ECRC100 OKFHMN_21235 raiA ribosome-associated translation inhibitor RaiA insig. 27 47
  Escherichia coli ECRC101 MCAODC_11765 raiA ribosome-associated translation inhibitor RaiA insig. 27 47
  Escherichia coli ECRC102 NIAGMN_19005 raiA ribosome-associated translation inhibitor RaiA cofit 27 47
  Escherichia coli ECRC62 BNILDI_11715 raiA ribosome-associated translation inhibitor RaiA insig. 27 47
  Escherichia coli ECRC98 JDDGAC_24900 raiA ribosome-associated translation inhibitor RaiA sig. 27 47
  Escherichia coli ECRC99 KEDOAH_06985 raiA ribosome-associated translation inhibitor RaiA no data 27 47
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01110 Ribosome-associated inhibitor A insig. 27 47
  Escherichia coli Nissle 1917 ECOLIN_RS14690 ribosome-associated translation inhibitor RaiA no data 27 47
  Escherichia coli BW25113 b2597 yfiA cold shock protein associated with 30S ribosomal subunit (NCBI) strong 27 47
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2947 Ribosome hibernation protein YhbH cofit 31 48
  Pseudomonas fluorescens FW300-N2E3 AO353_05185 hypothetical protein sig. 26 47
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5015 Ribosome hibernation protein YhbH insig. 26 47
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1081 Ribosome hibernation protein YhbH sig. 24 47
  Pseudomonas fluorescens FW300-N2C3 AO356_07040 hypothetical protein insig. 24 47
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3268 Ribosome hibernation protein YhbH sig. 24 47
  Enterobacter sp. TBS_079 MPMX20_04109 Ribosome hibernation promoting factor sig. 30 48
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4180 Ribosome hibernation protein YfiA insig. 25 54
  Dickeya dadantii 3937 DDA3937_RS01525 ribosome hibernation promoting factor sig. 30 48
  Escherichia coli BL21 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers sig. 30 48
  Escherichia fergusonii Becca EFB2_00620 Ribosome hibernation promoting factor insig. 30 48
  Escherichia coli ECOR27 NOLOHH_09735 Ribosome hibernation promoting factor insig. 30 48
  Escherichia coli ECOR38 HEPCGN_16810 Ribosome hibernation promoting factor cofit 30 48
  Escherichia coli ECRC100 OKFHMN_17935 Ribosome hibernation promoting factor insig. 30 48
  Escherichia coli ECRC101 MCAODC_08455 Ribosome hibernation promoting factor insig. 30 48
  Escherichia coli ECRC102 NIAGMN_15695 Ribosome hibernation promoting factor insig. 30 48
  Escherichia coli ECRC62 BNILDI_01800 Ribosome hibernation promoting factor strong 30 48
  Escherichia coli ECRC98 JDDGAC_21560 Ribosome hibernation promoting factor cofit 30 48
  Escherichia coli ECRC99 KEDOAH_10215 Ribosome hibernation promoting factor no data 30 48
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00497 Ribosome hibernation promoting factor sig. 30 48
  Escherichia coli Nissle 1917 ECOLIN_RS18430 ribosome hibernation promoting factor insig. 30 48
  Escherichia coli BW25113 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) sig. 30 48
  Marinobacter adhaerens HP15 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA cofit 28 49
  Pseudomonas sp. S08-1 OH686_08550 Ribosome hibernation promoting factor Hpf cofit 26 53
  Pseudomonas segetis P6 MPMX49_03859 Ribosome hibernation promoting factor strong 23 50
  Pseudomonas syringae pv. syringae B728a Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 27 53
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 27 53