Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| Phaeobacter inhibens DSM 17395 | PGA1_c27080 | | response regulator receiver protein | insig. | 100 | 100 |
o | Dinoroseobacter shibae DFL-12 | Dshi_3837 | | response regulator receiver and SARP domain protein (RefSeq) | insig. | 68 | 100 |
o | Bosea sp. OAE506 | ABIE41_RS04085 | | response regulator | sig. | 49 | 97 |
o | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3490 | | Response regulator receiver domain/Sigma-70, region 4 | strong | 52 | 95 |
o | Rhizobium sp. OAE497 | ABIE40_RS14460 | | response regulator | strong | 47 | 97 |
o | Sinorhizobium meliloti 1021 | SMc01504 | | two-component response regulator | strong | 49 | 97 |
o | Caulobacter crescentus NA1000 | CCNA_03591 | | anti-anti sigma factor/receiver protein PhyR | strong | 48 | 97 |
o | Caulobacter crescentus NA1000 Δfur | CCNA_03591 | | anti-anti sigma factor/receiver protein PhyR | cofit | 48 | 97 |
o | Agrobacterium fabrum C58 | Atu4162 | | two-component response regulator | strong | 46 | 97 |
o | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS14785 | | response regulator | strong | 47 | 94 |
o | Rhodopseudomonas palustris CGA009 | TX73_021890 | | response regulator | cofit | 49 | 93 |
| Sinorhizobium meliloti 1021 | SMc00794 | | two-component response regulator | strong | 46 | 94 |
o | Rhodospirillum rubrum S1H | Rru_A3285 | | Response regulator receiver domain protein (CheY) (NCBI) | insig. | 45 | 94 |
o | Azospirillum brasilense Sp245 | AZOBR_RS06745 | | regulator | insig. | 33 | 95 |
o | Azospirillum sp. SherDot2 | MPMX19_04424 | | Phyllosphere-induced regulator PhyR | insig. | 36 | 93 |
| Azospirillum brasilense Sp245 | AZOBR_RS21690 | | regulator | insig. | 36 | 93 |
| Azospirillum sp. SherDot2 | MPMX19_01090 | | Phyllosphere-induced regulator PhyR | insig. | 31 | 91 |
| Azospirillum sp. SherDot2 | MPMX19_02869 | | Sensor histidine kinase TmoS | insig. | 33 | 46 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0505 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | insig. | 33 | 47 |
| Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS00670 | | response regulator | no data | 38 | 43 |
| Rhizobium sp. OAE497 | ABIE40_RS22785 | | response regulator | insig. | 37 | 42 |
| Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS01555 | | response regulator | insig. | 38 | 43 |
| Azospirillum brasilense Sp245 | AZOBR_RS25995 | | regulator | strong | 37 | 41 |
| Desulfovibrio vulgaris Miyazaki F | DvMF_1460 | | putative PAS/PAC sensor protein (RefSeq) | cofit | 33 | 43 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1054 | | diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) | insig. | 31 | 44 |
| Azospirillum sp. SherDot2 | MPMX19_06040 | | Phyllosphere-induced regulator PhyR | insig. | 34 | 45 |
| Desulfovibrio vulgaris Hildenborough JW710 | DVU0681 | | sensor histidine kinase/response regulator (TIGR) | strong | 31 | 43 |
| Caulobacter crescentus NA1000 | CCNA_00286 | | two-component receiver domain protein LovR | cofit | 35 | 41 |
| Caulobacter crescentus NA1000 Δfur | CCNA_00286 | | two-component receiver domain protein LovR | cofit | 35 | 41 |
| Azospirillum sp. SherDot2 | MPMX19_04973 | | hypothetical protein | insig. | 36 | 44 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_19190 | | DNA-binding response regulator | insig. | 31 | 44 |
| Azospirillum brasilense Sp245 | AZOBR_RS07605 | | regulator | strong | 33 | 42 |
| Desulfovibrio vulgaris Miyazaki F | DvMF_2677 | | response regulator receiver sensor hybrid histidine kinase (RefSeq) | sig. | 29 | 46 |
| Agrobacterium fabrum C58 | Atu5378 | | two component response regulator | no data | 36 | 39 |
| Rhizobium sp. OAE497 | ABIE40_RS24250 | | response regulator | insig. | 32 | 42 |
| Rhizobium sp. OAE497 | ABIE40_RS27485 | | response regulator | insig. | 36 | 42 |
| Desulfovibrio vulgaris Miyazaki F | DvMF_1374 | | putative PAS/PAC sensor protein (RefSeq) | sig. | 36 | 40 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1141 | | Response regulator of the LytR/AlgR family | no data | 26 | 43 |
| Bosea sp. OAE506 | ABIE41_RS00485 | | response regulator | insig. | 33 | 38 |
| Bosea sp. OAE506 | ABIE41_RS24110 | | response regulator | insig. | 43 | 32 |
| Desulfovibrio vulgaris Hildenborough JW710 | DVU0933 | | response regulator (TIGR) | insig. | 36 | 30 |
| Rhizobium sp. OAE497 | ABIE40_RS20270 | | response regulator | insig. | 33 | 42 |
| Mycobacterium tuberculosis H37Rv | Rv1626 | | Probable two-component system transcriptional regulator | strong | 33 | 38 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_07605 | | response regulator | insig. | 30 | 42 |
| Azospirillum brasilense Sp245 | AZOBR_RS21875 | | histidine kinase | sig. | 29 | 45 |
| Rhizobium sp. OAE497 | ABIE40_RS26630 | | response regulator | insig. | 32 | 42 |
| Caulobacter crescentus NA1000 | CCNA_02967 | | PAS-family sensor histidine kinase | cofit | 24 | 54 |
| Caulobacter crescentus NA1000 Δfur | CCNA_02967 | | PAS-family sensor histidine kinase | insig. | 24 | 54 |
| Rhizobium sp. OAE497 | ABIE40_RS30650 | | response regulator | insig. | 32 | 41 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0013 | | Signal transduction histidine kinase | no data | 28 | 45 |
| Azospirillum sp. SherDot2 | MPMX19_03494 | | Regulatory protein AtoC | insig. | 38 | 42 |
| Desulfovibrio vulgaris Hildenborough JW710 | DVU2933 | | response regulator/sensory box/HDIG domain protein (TIGR) | strong | 29 | 45 |
| Pseudomonas syringae pv. syringae B728a | Psyr_2449 | | Response regulator receiver | sig. | 28 | 48 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2449 | | Response regulator receiver | insig. | 28 | 48 |
| Pectobacterium carotovorum WPP14 | HER17_RS12200 | | response regulator | cofit | 34 | 47 |
| Burkholderia phytofirmans PsJN | BPHYT_RS34760 | | sensor histidine kinase | sig. | 33 | 35 |
| Rahnella sp. WP5 | EX31_RS13605 | | response regulator | insig. | 32 | 48 |
| Rhizobium sp. OAE497 | ABIE40_RS27445 | | response regulator | insig. | 37 | 31 |
| Agrobacterium fabrum C58 | Atu4671 | | response regulator | insig. | 33 | 48 |
| Bifidobacterium breve UCC2003 | BBR_RS14310 | | ANTAR domain-containing protein | no data | 31 | 42 |
| Azospirillum brasilense Sp245 | AZOBR_RS16625 | | regulator | insig. | 29 | 31 |
| Rhodospirillum rubrum S1H | Rru_A0694 | | Response regulator receiver (CheY) and unknown domain protein (NCBI) | insig. | 32 | 40 |
| Azospirillum sp. SherDot2 | MPMX19_01131 | | hypothetical protein | no data | 30 | 46 |
| Agrobacterium fabrum C58 | Atu4047 | | two component sensor kinase/response regulator hybrid | insig. | 28 | 62 |
| Azospirillum sp. SherDot2 | MPMX19_00465 | | putative transcriptional regulatory protein pdtaR | insig. | 33 | 48 |
| Azospirillum sp. SherDot2 | MPMX19_05885 | | Sensor histidine kinase RcsC | insig. | 27 | 42 |
| Pseudomonas putida KT2440 | PP_4099 | | two-componenent system BarA/UvrY - regulatory subunit | strong | 30 | 32 |
| Sphingomonas koreensis DSMZ 15582 | Ga0059261_2971 | | Response regulator receiver domain | no data | 35 | 42 |
| Rhizobium sp. OAE497 | ABIE40_RS30340 | | response regulator | insig. | 25 | 60 |
| Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS05610 | | DNA-binding response regulator | insig. | 31 | 42 |
| Rhizobium sp. OAE497 | ABIE40_RS26970 | | response regulator | insig. | 31 | 41 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2789 | | DNA-binding response regulator, LuxR family | insig. | 36 | 31 |
| Burkholderia phytofirmans PsJN | BPHYT_RS09270 | | histidine kinase | cofit | 36 | 30 |
| Azospirillum brasilense Sp245 | AZOBR_RS31670 | | hypothetical protein | insig. | 28 | 46 |
| Enterobacter asburiae PDN3 | EX28DRAFT_2932 | | Response regulator of citrate/malate metabolism | insig. | 36 | 32 |
| Kangiella aquimarina DSM 16071 | B158DRAFT_1279 | | two component transcriptional regulator, winged helix family | insig. | 39 | 31 |
| Pseudomonas putida KT2440 | PP_3757 | | Chemotaxis protein CheY | insig. | 27 | 45 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3803 | | Response regulator of the LytR/AlgR family | strong | 24 | 41 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_10140 | | DNA-binding response regulator | insig. | 32 | 42 |
| Variovorax sp. SCN45 | GFF215 | | RNA polymerase sigma-54 factor RpoN | insig. | 31 | 50 |
| Azospirillum brasilense Sp245 | AZOBR_RS14935 | | histidine kinase | insig. | 28 | 58 |
| Pseudomonas putida KT2440 | PP_3546 | | Sensory box histidine kinase/response regulator | insig. | 24 | 41 |
| Desulfovibrio vulgaris Miyazaki F | DvMF_1461 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | no data | 38 | 30 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS00095 | | RNA polymerase sigma factor | insig. | 30 | 43 |
| Ralstonia solanacearum UW163 | UW163_RS07540 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 37 | 45 |
| Enterobacter sp. TBS_079 | MPMX20_03728 | | Transcriptional regulatory protein DpiA | insig. | 35 | 32 |
| Dickeya dianthicola 67-19 | HGI48_RS09770 | | response regulator | insig. | 32 | 44 |
| Dickeya dianthicola ME23 | DZA65_RS10080 | | response regulator | insig. | 32 | 44 |
| Desulfovibrio vulgaris Hildenborough JW710 | DVU2114 | atoC | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | insig. | 28 | 43 |
| Pseudomonas putida KT2440 | PP_3969 | | Response regulator | insig. | 26 | 42 |
| Ralstonia solanacearum IBSBF1503 | RALBFv3_RS06085 | | sigma-54-dependent Fis family transcriptional regulator | strong | 37 | 45 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS30720 | | hybrid sensor histidine kinase/response regulator | insig. | 34 | 25 |
| Pseudomonas sp. RS175 | PFR28_02558 | | Sensor histidine kinase RcsC | insig. | 32 | 41 |
| Dickeya dadantii 3937 | DDA3937_RS09755 | | response regulator | insig. | 31 | 44 |
| Lysobacter sp. OAE881 | ABIE51_RS14405 | | response regulator | no data | 31 | 41 |
| Azospirillum brasilense Sp245 | AZOBR_RS10765 | | histidine kinase | cofit | 29 | 45 |
| Azospirillum sp. SherDot2 | MPMX19_02821 | | Sensor histidine kinase RcsC | insig. | 27 | 42 |
| Pseudomonas sp. S08-1 | OH686_00335 | | BarA-associated response regulator UvrY ( GacA SirA) | strong | 29 | 32 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS16465 | | hybrid sensor histidine kinase/response regulator | cofit | 29 | 38 |
| Variovorax sp. OAS795 | ABID97_RS16445 | | sigma-70 family RNA polymerase sigma factor | no data | 32 | 43 |