Homologs of PS417_05120 from Pseudomonas simiae WCS417

RNA polymerase subunit sigma-24
SEED: FIG006045: Sigma factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas simiae WCS417 PS417_05120 RNA polymerase subunit sigma-24 insig. 100 100
o Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 99 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 99 99
o Pseudomonas fluorescens FW300-N2E3 AO353_04915 RNA polymerase subunit sigma-24 insig. 87 99
o Pseudomonas sp. DMC3 GFF1893 putative RNA polymerase sigma factor FecI insig. 84 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4951 FIG006045: Sigma factor, ECF subfamily insig. 86 97
o Pseudomonas sp. SVBP6 COO64_RS11395 RNA polymerase sigma factor insig. 78 93
o Pseudomonas sp. BP01 JOY50_RS15495 RNA polymerase sigma factor insig. 72 92
o Pseudomonas putida KT2440 PP_4608 RNA polymerase sigma-70 factor, ECF subfamily insig. 70 93
o Pseudomonas aeruginosa PA14 IKLFDK_24795 RNA polymerase sigma factor insig. 68 91
o Dechlorosoma suillum PS Dsui_1673 RNA polymerase sigma factor, sigma-70 family no data 35 81
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 37 85
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 36 83
  Rhodospirillum rubrum S1H Rru_A1438 Sigma-24 (FecI) (NCBI) cofit 37 79
  Pseudomonas sp. SVBP6 COO64_RS02925 RNA polymerase sigma factor insig. 35 81
  Pseudomonas fluorescens SBW25 PFLU_RS26350 RNA polymerase sigma factor insig. 36 81
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26350 RNA polymerase sigma factor sig. 36 81
  Pseudomonas simiae WCS417 PS417_24420 RNA polymerase sigma70 no data 37 76
  Pseudomonas fluorescens FW300-N2C3 AO356_05230 RNA polymerase subunit sigma-24 insig. 34 81
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2900 FIG006045: Sigma factor, ECF subfamily insig. 34 79
  Pseudomonas sp. SVBP6 COO64_RS04525 RNA polymerase sigma factor insig. 33 81
  Pseudomonas sp. BP01 JOY50_RS11380 RNA polymerase sigma factor insig. 32 81
  Pseudomonas putida KT2440 PP_1008 RNA polymerase subunit sigma-24 strong 32 81
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0778 RNA polymerase sigma factor, sigma-70 family insig. 35 73
  Lysobacter sp. OAE881 ABIE51_RS06950 RNA polymerase sigma factor strong 36 93
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS02700 RNA polymerase sigma-70 factor insig. 29 86
  Rhodopseudomonas palustris CGA009 TX73_012350 RNA polymerase sigma factor insig. 33 81
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2293 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 33 80
  Pseudomonas sp. BP01 JOY50_RS22705 RNA polymerase sigma factor insig. 35 79
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS06665 RNA polymerase sigma factor insig. 34 83
  Ralstonia solanacearum UW163 UW163_RS06960 RNA polymerase sigma factor insig. 34 83
  Pseudomonas sp. DMC3 GFF4554 hypothetical protein cofit 33 80
  Pseudomonas sp. SVBP6 COO64_RS18740 RNA polymerase factor sigma-70 cofit 34 80
  Pseudomonas aeruginosa PA14 IKLFDK_11920 pyoverdine signaling pathway sigma factor PvdS insig. 33 80
  Azospirillum brasilense Sp245 AZOBR_RS29160 putative RNA polymerase sigma-70 factor ECF subfamily insig. 32 81
  Pseudomonas sp. RS175 PFR28_01023 hypothetical protein sig. 33 80
  Azospirillum sp. SherDot2 MPMX19_03082 ECF RNA polymerase sigma factor SigE insig. 34 81
  Pseudomonas fluorescens FW300-N2C3 AO356_02895 RNA polymerase subunit sigma-70 strong 33 80
  Azospirillum brasilense Sp245 AZOBR_RS26615 RNA polymerase insig. 39 78
  Azospirillum brasilense Sp245 AZOBR_RS23325 RNA polymerase sigma70 insig. 34 84
  Ralstonia solanacearum PSI07 RPSI07_RS10560 RNA polymerase sigma factor insig. 33 83
  Ralstonia solanacearum GMI1000 RS_RS14615 RNA polymerase sigma factor insig. 34 78
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_216 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 32 80
  Rhodopseudomonas palustris CGA009 TX73_016965 RNA polymerase sigma factor insig. 37 74
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00265 RNA polymerase sigma-70 factor insig. 30 88
  Pseudomonas simiae WCS417 PS417_22700 RNA polymerase subunit sigma-24 strong 32 81
  Pseudomonas putida KT2440 PP_0865 ECF subfamily RNA polymerase sigma-24 factor insig. 35 79
  Pseudomonas sp. DMC3 GFF5154 hypothetical protein insig. 32 79
  Azospirillum sp. SherDot2 MPMX19_03247 putative RNA polymerase sigma factor FecI insig. 33 80
  Pseudomonas sp. SVBP6 COO64_RS03795 RNA polymerase sigma factor insig. 32 78
  Pseudomonas fluorescens SBW25 PFLU_RS21525 RNA polymerase factor sigma-70 insig. 32 80
  Pseudomonas fluorescens SBW25-INTG PFLU_RS21525 RNA polymerase factor sigma-70 sig. 32 80
  Pseudomonas simiae WCS417 PS417_19555 RNA polymerase sigma70 strong 32 80
  Pseudomonas sp. RS175 PFR28_00559 ECF RNA polymerase sigma factor SigE insig. 34 79
  Pseudomonas syringae pv. syringae B728a Psyr_1107 Sigma-70 region 2 insig. 33 84
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1107 Sigma-70 region 2 insig. 33 84
o Cellulophaga baltica 18 M666_RS00810 sigma-70 family RNA polymerase sigma factor insig. 32 81
  Herbaspirillum seropedicae SmR1 HSERO_RS22395 RNA polymerase sigma factor insig. 36 76
  Pseudomonas fluorescens SBW25 PFLU_RS28550 RNA polymerase sigma factor insig. 33 85
  Pseudomonas fluorescens SBW25-INTG PFLU_RS28550 RNA polymerase sigma factor insig. 33 85
  Pseudomonas sp. BP01 JOY50_RS19220 RNA polymerase sigma factor insig. 31 78
  Dechlorosoma suillum PS Dsui_2948 RNA polymerase sigma factor, sigma-70 family insig. 32 81
  Pseudomonas fluorescens SBW25 PFLU_RS24340 sigma-70 family RNA polymerase sigma factor insig. 31 81
  Pseudomonas fluorescens SBW25-INTG PFLU_RS24340 sigma-70 family RNA polymerase sigma factor strong 31 81
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 31 77
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1886 FIG006045: Sigma factor, ECF subfamily insig. 30 79
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_604 FIG006045: Sigma factor, ECF subfamily insig. 30 79
  Pseudomonas sp. DMC3 GFF759 putative RNA polymerase sigma factor FecI insig. 30 77
  Pseudomonas sp. BP01 JOY50_RS00025 RNA polymerase factor sigma-70 insig. 32 81
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 30 77
  Dechlorosoma suillum PS Dsui_0621 RNA polymerase sigma factor, sigma-70 family insig. 32 80
  Pseudomonas sp. BP01 JOY50_RS12920 RNA polymerase sigma factor insig. 36 80
  Pseudomonas sp. SVBP6 COO64_RS12800 RNA polymerase sigma factor insig. 32 87
  Pseudomonas syringae pv. syringae B728a Psyr_1943 Sigma-70 region 2 strong 31 86
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1943 Sigma-70 region 2 sig. 31 86
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2404 Sigma factor PvdS, controling pyoverdin biosynthesis sig. 32 77
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 31 77
  Pseudomonas aeruginosa PA14 IKLFDK_06170 RNA polymerase subunit sigma insig. 33 84
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_29 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 32 81
  Dechlorosoma suillum PS Dsui_2977 RNA polymerase sigma factor, sigma-70 family insig. 39 70
  Herbaspirillum seropedicae SmR1 HSERO_RS12165 RNA polymerase sigma factor insig. 36 79
  Pseudomonas sp. BP01 JOY50_RS12755 sigma-70 family RNA polymerase sigma factor insig. 33 82
  Pseudomonas fluorescens FW300-N2C3 AO356_21215 RNA polymerase subunit sigma-24 insig. 32 81
  Pseudomonas sp. RS175 PFR28_02859 putative RNA polymerase sigma factor FecI insig. 32 82
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 36 68
  Pseudomonas putida KT2440 PP_4244 alternative sigma factor sig. 32 81
  Pseudomonas fluorescens FW300-N2E3 AO353_03435 RNA polymerase subunit sigma-24 insig. 31 79
  Pseudomonas sp. RS175 PFR28_02867 putative RNA polymerase sigma factor FecI insig. 30 77
  Pseudomonas sp. BP01 JOY50_RS02475 sigma-70 family RNA polymerase sigma factor no data 34 83
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1181 FIG006045: Sigma factor, ECF subfamily insig. 33 86
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS13395 sigma-70 family RNA polymerase sigma factor insig. 30 84
  Pseudomonas simiae WCS417 PS417_00670 RNA polymerase sigma factor sig. 35 83
  Pseudomonas sp. DMC3 GFF1353 putative RNA polymerase sigma factor FecI cofit 33 79
  Pseudomonas simiae WCS417 PS417_09740 RNA polymerase subunit sigma-24 insig. 32 79
  Pseudomonas fluorescens FW300-N2E3 AO353_19345 RNA polymerase subunit sigma-70 insig. 31 80
  Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 29 79
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS04645 sigma-70 family RNA polymerase sigma factor cofit 30 85
  Pseudomonas aeruginosa PA14 IKLFDK_09340 RNA polymerase subunit sigma no data 31 78
  Pseudomonas sp. RS175 PFR28_00037 putative RNA polymerase sigma factor FecI insig. 35 81
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS03570 RNA polymerase sigma-70 factor insig. 30 86