Conservation of cofitness between RR42_RS00905 and RR42_RS14155 in Cupriavidus basilensis FW507-4G11

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS00905 haloacid dehalogenase 1.0 RR42_RS14155 pseudouridine synthase 0.34 12
Ralstonia solanacearum PSI07 0.66 RPSI07_RS22825 HAD family phosphatase 0.68 RPSI07_RS19085 RluA family pseudouridine synthase low > 81
Ralstonia solanacearum GMI1000 0.66 RS_RS01330 HAD family phosphatase 0.68 RS_RS05155 RluA family pseudouridine synthase low > 80
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS06290 HAD family phosphatase 0.68 ABZR87_RS10090 RluA family pseudouridine synthase low > 80
Ralstonia solanacearum UW163 0.63 UW163_RS03090 HAD family phosphatase 0.69 UW163_RS11840 RluA family pseudouridine synthase — —
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS10490 HAD family phosphatase 0.69 RALBFv3_RS14375 RluA family pseudouridine synthase low > 76
Paraburkholderia graminis OAS925 0.41 ABIE53_006171 HAD superfamily hydrolase (TIGR01509 family) 0.65 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase low > 113
Acidovorax sp. GW101-3H11 0.41 Ac3H11_3005 Putative phosphatase YieH 0.48 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 79
Variovorax sp. OAS795 0.41 ABID97_RS25155 HAD family phosphatase 0.45 ABID97_RS08250 RluA family pseudouridine synthase low > 91
Variovorax sp. SCN45 0.40 GFF2001 Putative phosphatase YieH 0.46 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) low > 127
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS24950 HAD family hydrolase 0.64 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C — —
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_02444 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED 0.64 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase low > 103
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS37130 HAD family phosphatase 0.64 QEN71_RS04500 RluA family pseudouridine synthase low > 153
Sinorhizobium meliloti 1021 0.30 SMc01502 hydrolase phosphatase 0.23 SMc01275 ribosomal large subunit pseudouridine synthase C protein low > 103
Rhizobium sp. OAE497 0.29 ABIE40_RS16990 HAD family hydrolase 0.23 ABIE40_RS09915 RluA family pseudouridine synthase low > 107
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.1753.1 hydrolase 0.35 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 74
Phaeobacter inhibens DSM 17395 0.28 PGA1_c29250 putative haloacid dehalogenase-like hydrolase 0.22 PGA1_c01950 ribosomal large subunit pseudouridine synthase C — —
Agrobacterium fabrum C58 0.26 Atu0790 hypothetical protein 0.22 Atu1471 ribosomal large subunit pseudouridine synthase C — —
Rahnella sp. WP5 0.26 EX31_RS06035 6-phosphogluconate phosphatase 0.43 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.25 GFF1739 Putative phosphatase YieH 0.44 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 78
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS00780 sugar transferase 0.62 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C low > 78
Klebsiella michiganensis M5al 0.25 BWI76_RS00115 6-phosphogluconate phosphatase 0.44 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase low > 92
Dickeya dianthicola ME23 0.25 DZA65_RS22585 6-phosphogluconate phosphatase 0.40 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Dickeya dianthicola 67-19 0.25 HGI48_RS21600 6-phosphogluconate phosphatase 0.40 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 71
Dickeya dadantii 3937 0.25 DDA3937_RS21430 6-phosphogluconate phosphatase 0.40 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Enterobacter asburiae PDN3 0.24 EX28DRAFT_3999 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED 0.43 EX28DRAFT_1844 pseudouridine synthase, RluA family low > 76
Pectobacterium carotovorum WPP14 0.24 HER17_RS21735 6-phosphogluconate phosphatase 0.44 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli ECRC102 0.24 NIAGMN_12685 yieH 6-phosphogluconate phosphatase 0.44 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia fergusonii Becca 0.24 EFB2_04917 6-phosphogluconate phosphatase 0.44 EFB2_02889 Ribosomal large subunit pseudouridine synthase C low > 86
Escherichia coli ECRC100 0.24 OKFHMN_14930 yieH 6-phosphogluconate phosphatase 0.44 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 80
Escherichia coli ECOR38 0.24 HEPCGN_13635 yieH 6-phosphogluconate phosphatase 0.44 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Brevundimonas sp. GW460-12-10-14-LB2 0.24 A4249_RS04845 HAD-IA family hydrolase 0.19 A4249_RS07865 RluA family pseudouridine synthase low > 48
Escherichia coli ECRC99 0.24 KEDOAH_13220 yieH 6-phosphogluconate phosphatase 0.44 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC101 0.24 MCAODC_05440 yieH 6-phosphogluconate phosphatase 0.44 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli ECRC98 0.24 JDDGAC_18550 yieH 6-phosphogluconate phosphatase 0.44 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Escherichia coli Nissle 1917 0.24 ECOLIN_RS21390 6-phosphogluconate phosphatase 0.44 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 55
Escherichia coli BW25113 0.24 b3715 yieH predicted hydrolase (NCBI) 0.44 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) low > 76
Enterobacter sp. TBS_079 0.24 MPMX20_04644 6-phosphogluconate phosphatase 0.43 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C low > 85
Escherichia coli ECRC62 0.23 BNILDI_04450 yieH 6-phosphogluconate phosphatase 0.44 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.23 OHPLBJKB_04338 6-phosphogluconate phosphatase 0.44 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C low > 73
Escherichia coli ECOR27 0.23 NOLOHH_07080 yieH 6-phosphogluconate phosphatase 0.44 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli BL21 0.23 ECD_03599 phosphoenolpyruvate and 6-phosphogluconate phosphatase 0.44 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase low > 61
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS10295 HAD-IA family hydrolase 0.41 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.22 56
Pseudomonas fluorescens SBW25 0.23 PFLU_RS10295 HAD-IA family hydrolase 0.41 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pseudomonas simiae WCS417 0.22 PS417_09695 hydrolase 0.41 PS417_21480 23S rRNA pseudouridylate synthase low > 88
Serratia liquefaciens MT49 0.21 IAI46_25215 6-phosphogluconate phosphatase 0.43 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Pantoea sp. MT58 0.19 IAI47_18805 6-phosphogluconate phosphatase 0.44 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 76
Magnetospirillum magneticum AMB-1 0.17 AMB_RS00805 haloacid dehalogenase 0.21 AMB_RS15620 RluA family pseudouridine synthase low > 64
Shewanella sp. ANA-3 0.17 Shewana3_0432 2-deoxyglucose-6-phosphatase (RefSeq) 0.42 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) low > 73
Azospirillum sp. SherDot2 0.16 MPMX19_01934 Phosphorylated carbohydrates phosphatase 0.23 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C low > 112
Erwinia tracheiphila SCR3 0.15 LU632_RS15700 yqaB fructose-1-phosphate/6-phosphogluconate phosphatase 0.45 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74

Not shown: 13 genomes with orthologs for RR42_RS00905 only; 31 genomes with orthologs for RR42_RS14155 only