| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS20855 | | cold-shock protein | 1.0 | RR42_RS06585 | | GTP pyrophosphokinase | 0.50 | 7 |
| Ralstonia sp. UNC404CL21Col | 0.95 | ABZR87_RS16270 | | cold-shock protein | 0.77 | ABZR87_RS13745 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.93 | RS_RS17205 | | cold-shock protein | 0.76 | RS_RS07930 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.93 | RPSI07_RS00010 | | cold-shock protein | 0.76 | RPSI07_RS15685 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Ralstonia solanacearum UW163 | 0.92 | UW163_RS16510 | | cold-shock protein | 0.75 | UW163_RS15115 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.92 | RALBFv3_RS23260 | | cold-shock protein | 0.75 | RALBFv3_RS01805 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Burkholderia phytofirmans PsJN | 0.84 | BPHYT_RS34185 | | cold-shock protein | 0.66 | BPHYT_RS13655 | | GTP pyrophosphokinase | low | > 109 |
| Rhodanobacter denitrificans FW104-10B01 | 0.75 | LRK54_RS17025 | | cold-shock protein | 0.36 | LRK54_RS12725 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.75 | LRK55_RS16740 | | cold-shock protein | 0.36 | LRK55_RS12430 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Shewanella amazonensis SB2B | 0.74 | Sama_2058 | | cold-shock DNA-binding domain-containing protein (RefSeq) | 0.37 | Sama_1033 | | GTP diphosphokinase (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.73 | Shewana3_1751 | | cold-shock DNA-binding protein family protein (RefSeq) | 0.37 | Shewana3_1111 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.73 | SO2628 | cspD | stress response protein CspD (NCBI ptt file) | 0.37 | SO3455 | relA | GTP pyrophosphokinase (NCBI ptt file) | low | > 76 |
| Rhodanobacter sp. FW510-T8 | 0.72 | OKGIIK_07815 | cspC | cold-shock protein | 0.36 | OKGIIK_02170 | relA | GTP diphosphokinase | — | — |
| Shewanella loihica PV-4 | 0.72 | Shew_1564 | | cold-shock DNA-binding domain-containing protein (RefSeq) | 0.37 | Shew_1202 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | 0.33 | 53 |
| Pseudomonas simiae WCS417 | 0.70 | PS417_19715 | | cold-shock protein | 0.39 | PS417_20150 | | (p)ppGpp synthetase | — | — |
| Alteromonas macleodii MIT1002 | 0.70 | MIT1002_01832 | | Cold shock-like protein CspD | 0.37 | MIT1002_00794 | | GTP pyrophosphokinase | low | > 70 |
| Rahnella sp. WP5 | 0.69 | EX31_RS18570 | | cold shock-like protein CspD | 0.36 | EX31_RS07955 | | GTP diphosphokinase | low | > 89 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.69 | GFF4903 | | Cold shock protein CspD | 0.37 | GFF4837 | | 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 | — | — |
| Dickeya dadantii 3937 | 0.68 | DDA3937_RS09550 | | cold shock-like protein CspD | 0.37 | DDA3937_RS17015 | | GTP diphosphokinase | low | > 74 |
| Escherichia coli ECRC99 | 0.68 | KEDOAH_22110 | cspD | cold shock-like protein CspD | 0.37 | KEDOAH_07880 | relA | GTP diphosphokinase | — | — |
| Klebsiella michiganensis M5al | 0.68 | BWI76_RS09605 | | cold-shock protein | 0.37 | BWI76_RS22805 | | GTP diphosphokinase | — | — |
| Escherichia coli ECRC62 | 0.68 | BNILDI_20450 | cspD | cold shock-like protein CspD | 0.37 | BNILDI_10630 | relA | GTP diphosphokinase | low | > 75 |
| Escherichia coli ECRC102 | 0.68 | NIAGMN_03840 | cspD | cold shock-like protein CspD | 0.37 | NIAGMN_18020 | relA | GTP diphosphokinase | — | — |
| Escherichia coli ECRC100 | 0.68 | OKFHMN_05800 | cspD | cold shock-like protein CspD | 0.37 | OKFHMN_20250 | relA | GTP diphosphokinase | low | > 80 |
| Escherichia coli ECRC101 | 0.68 | MCAODC_25015 | cspD | cold shock-like protein CspD | 0.37 | MCAODC_10775 | relA | GTP diphosphokinase | low | > 87 |
| Dickeya dianthicola ME23 | 0.68 | DZA65_RS09875 | | cold shock-like protein CspD | 0.37 | DZA65_RS18145 | | GTP diphosphokinase | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.68 | CSW01_18795 | | cold-shock protein CspV | 0.38 | CSW01_12405 | | GTP diphosphokinase | low | > 62 |
| Dickeya dianthicola 67-19 | 0.68 | HGI48_RS09565 | | cold shock-like protein CspD | 0.37 | HGI48_RS17070 | | GTP diphosphokinase | low | > 71 |
| Escherichia coli ECRC98 | 0.68 | JDDGAC_09435 | cspD | cold shock-like protein CspD | 0.37 | JDDGAC_23915 | relA | GTP diphosphokinase | low | > 86 |
| Pantoea sp. MT58 | 0.68 | IAI47_12955 | | cold shock-like protein CspD | 0.37 | IAI47_04120 | | GTP diphosphokinase | low | > 76 |
| Escherichia fergusonii Becca | 0.68 | EFB2_03181 | | Cold shock-like protein CspD | 0.37 | EFB2_01133 | | GTP pyrophosphokinase | low | > 86 |
| Escherichia coli ECOR38 | 0.68 | HEPCGN_22885 | cspD | cold shock-like protein CspD | 0.37 | HEPCGN_19500 | relA | GTP diphosphokinase | low | > 87 |
| Escherichia coli Nissle 1917 | 0.68 | ECOLIN_RS04685 | | cold shock-like protein CspD | 0.37 | ECOLIN_RS15515 | | GTP diphosphokinase | — | — |
| Escherichia coli BL21 | 0.68 | ECD_00885 | | inhibitor of DNA replication, cold shock protein-like protein | 0.37 | ECD_02629 | | (p)ppGpp synthetase I/GTP pyrophosphokinase | — | — |
| Escherichia coli ECOR27 | 0.68 | NOLOHH_22195 | cspD | cold shock-like protein CspD | 0.37 | NOLOHH_12125 | relA | GTP diphosphokinase | low | > 75 |
| Escherichia coli BW25113 | 0.68 | b0880 | cspD | cold shock protein homolog (NCBI) | 0.37 | b2784 | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.68 | OHPLBJKB_02788 | | Cold shock-like protein CspD | 0.37 | OHPLBJKB_00947 | | GTP pyrophosphokinase | — | — |
| Enterobacter sp. TBS_079 | 0.67 | MPMX20_01542 | | Cold shock-like protein CspD | 0.37 | MPMX20_03653 | | GTP pyrophosphokinase | low | > 85 |
| Enterobacter asburiae PDN3 | 0.67 | EX28DRAFT_2052 | | cold shock domain protein CspD | 0.36 | EX28DRAFT_2864 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.67 | HER17_RS12410 | | cold shock-like protein CspD | 0.37 | HER17_RS04115 | | GTP diphosphokinase | low | > 75 |
| Pseudomonas fluorescens SBW25 | 0.66 | PFLU_RS21685 | | cold-shock protein | 0.39 | PFLU_RS22095 | | GTP diphosphokinase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.66 | PFLU_RS21685 | | cold-shock protein | 0.39 | PFLU_RS22095 | | GTP diphosphokinase | low | > 109 |
| Pseudomonas sp. S08-1 | 0.64 | OH686_17410 | | Cold shock protein of CSP family | 0.40 | OH686_18960 | | Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase , (p)ppGpp synthetase I | — | — |
| Kangiella aquimarina DSM 16071 | 0.63 | B158DRAFT_1826 | | Cold shock proteins | 0.34 | B158DRAFT_2277 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 40 |
| Marinobacter adhaerens HP15 | 0.62 | HP15_2054 | | cold shock, CspA | 0.39 | HP15_791 | | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA | low | > 73 |
Not shown: 16 genomes with orthologs for RR42_RS20855 only; 31 genomes with orthologs for RR42_RS06585 only