Conservation of cofitness between RR42_RS37475 and RR42_RS00040 in Cupriavidus basilensis FW507-4G11

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS37475 peptide chain release factor 3 1.0 RR42_RS00040 recombinase 0.38 19
Ralstonia solanacearum PSI07 0.87 RPSI07_RS07810 peptide chain release factor 3 0.24 RPSI07_RS15555 recombinase family protein low > 81
Ralstonia solanacearum UW163 0.87 UW163_RS16595 peptide chain release factor 3 0.24 UW163_RS01540 recombinase family protein — —
Ralstonia solanacearum IBSBF1503 0.87 RALBFv3_RS23345 peptide chain release factor 3 0.25 RALBFv3_RS12085 recombinase family protein low > 76
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.1590.1 Peptide chain release factor 3 0.42 Xcc-8004.3230.1 Phage DNA invertase — —
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_2239 peptide chain release factor 3 0.31 B158DRAFT_0960 Site-specific recombinases, DNA invertase Pin homologs low > 40
Shewanella loihica PV-4 0.64 Shew_2820 prfC peptide chain release factor 3 (RefSeq) 0.60 Shew_3862 resolvase domain-containing protein (RefSeq) low > 60
Dechlorosoma suillum PS 0.63 Dsui_2418 peptide chain release factor 3 0.40 Dsui_2500 site-specific recombinase, DNA invertase Pin low > 51
Enterobacter sp. TBS_079 0.63 MPMX20_00673 Peptide chain release factor RF3 0.30 MPMX20_04745 Transposon Tn3 resolvase low > 85
Enterobacter asburiae PDN3 0.63 EX28DRAFT_3583 peptide chain release factor 3 0.40 EX28DRAFT_3112 Site-specific recombinases, DNA invertase Pin homologs low > 76
Pseudomonas stutzeri RCH2 0.62 Psest_3351 peptide chain release factor 3 0.46 Psest_4043 Site-specific recombinases, DNA invertase Pin homologs low > 67
Klebsiella michiganensis M5al 0.62 BWI76_RS04100 peptide chain release factor 3 0.41 BWI76_RS12375 DNA-invertase hin low > 92
Dickeya dadantii 3937 0.62 DDA3937_RS02445 peptide chain release factor 3 0.33 DDA3937_RS12095 recombinase family protein low > 74
Shewanella sp. ANA-3 0.62 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) 0.26 Shewana3_4319 resolvase domain-containing protein (RefSeq) 0.38 69
Escherichia coli Nissle 1917 0.62 ECOLIN_RS25110 peptide chain release factor 3 0.24 ECOLIN_RS26325 recombinase family protein low > 55
Escherichia coli ECRC62 0.62 BNILDI_08000 prfC peptide chain release factor 3 0.32 BNILDI_21055 DNA-invertase low > 75
Pseudomonas putida KT2440 0.62 PP_0872 Peptide chain release factor 3 0.31 PP_5490 site-specific DNA recombinase low > 96
Escherichia coli BL21 0.62 ECD_04250 peptide chain release factor RF-3 0.27 ECD_01345 Rac prophage; putative site-specific recombinase — —
Escherichia coli ECRC99 0.62 KEDOAH_16865 prfC peptide chain release factor 3 0.22 KEDOAH_16415 spoIVCA resolvase — —
Escherichia coli BW25113 0.62 b4375 prfC peptide chain release factor 3 (NCBI) 0.42 b1158 pin e14 prophage; site-specific DNA recombinase (NCBI) low > 76
Escherichia coli ECRC102 0.62 NIAGMN_09130 prfC peptide chain release factor 3 0.43 NIAGMN_07460 pinE site-specific DNA recombinase — —
Escherichia coli ECOR38 0.62 HEPCGN_09285 prfC peptide chain release factor 3 0.44 HEPCGN_26710 spoIVCA DNA-invertase low > 87
Escherichia coli ECRC98 0.62 JDDGAC_14875 prfC peptide chain release factor 3 0.42 JDDGAC_13045 pinE site-specific DNA recombinase low > 86
Escherichia coli ECRC101 0.62 MCAODC_01795 prfC peptide chain release factor 3 0.43 MCAODC_00110 pinE site-specific DNA recombinase low > 87
Escherichia fergusonii Becca 0.62 EFB2_04072 Peptide chain release factor RF3 0.43 EFB2_03222 DNA-invertase hin low > 86
Escherichia coli ECRC100 0.62 OKFHMN_11280 prfC peptide chain release factor 3 0.42 OKFHMN_09410 pinE site-specific DNA recombinase low > 80
Escherichia coli ECOR27 0.62 NOLOHH_03600 prfC peptide chain release factor 3 0.38 NOLOHH_00080 Resolvase/invertase-type recombinase catalytic domain-containing protein low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_03687 Peptide chain release factor RF3 0.27 OHPLBJKB_02167 Tn3 family transposase ISYps3 low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF1035 Peptide chain release factor 3 0.41 GFF1543 DNA-invertase low > 78
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) 0.42 Psyr_2668 Helix-turn-helix, Fis-type — —
Dickeya dianthicola ME23 0.62 DZA65_RS02505 peptide chain release factor 3 0.52 DZA65_RS16340 recombinase family protein low > 75
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) 0.42 Psyr_2668 Helix-turn-helix, Fis-type — —
Dickeya dianthicola 67-19 0.61 HGI48_RS02400 peptide chain release factor 3 0.53 HGI48_RS15525 recombinase family protein — —
Erwinia tracheiphila SCR3 0.61 LU632_RS02475 prfC peptide chain release factor 3 0.44 LU632_RS10670 recombinase family protein low > 74
Alteromonas macleodii MIT1002 0.61 MIT1002_01192 Peptide chain release factor 3 0.20 MIT1002_02482 DNA-invertase hin low > 70
Acinetobacter radioresistens SK82 0.60 MPMX26_00476 Peptide chain release factor RF3 0.23 MPMX26_03181 DNA-invertase hin low > 36
Azospirillum brasilense Sp245 0.57 AZOBR_RS14730 peptide chain release factor 3 0.38 AZOBR_RS32770 invertase — —
Paraburkholderia graminis OAS925 0.57 ABIE53_004717 peptide chain release factor 3 0.36 ABIE53_000503 DNA invertase Pin-like site-specific DNA recombinase low > 113
Magnetospirillum magneticum AMB-1 0.56 AMB_RS01375 peptide chain release factor 3 0.41 AMB_RS16710 recombinase family protein — —
Rhodospirillum rubrum S1H 0.55 Rru_A2497 Peptide chain release factor 3 (NCBI) 0.40 Rru_B0010 Resolvase (NCBI) low > 58
Azospirillum sp. SherDot2 0.55 MPMX19_01192 Peptide chain release factor 3 0.34 MPMX19_06438 DNA-invertase hin — —
Variovorax sp. SCN45 0.54 GFF2045 Peptide chain release factor 3 0.39 GFF7081 Mobile element protein — —
Sinorhizobium meliloti 1021 0.51 SMc00427 peptide chain release factor RF-3 protein 0.27 SMc02287 DNA-invertase low > 103
Parabacteroides merdae CL09T00C40 0.51 HMPREF1078_RS04145 peptide chain release factor 3 0.18 HMPREF1078_RS15975 master DNA invertase Mpi family serine-type recombinase low > 61
Rhizobium sp. OAE497 0.51 ABIE40_RS01450 peptide chain release factor 3 0.14 ABIE40_RS04405 recombinase family protein low > 107
Rhodopseudomonas palustris CGA009 0.50 TX73_011820 peptide chain release factor 3 0.28 TX73_023600 recombinase family protein low > 86
Dinoroseobacter shibae DFL-12 0.50 Dshi_1336 peptide chain release factor 3 (RefSeq) 0.41 Dshi_3683 Resolvase domain (RefSeq) low > 64
Phocaeicola vulgatus CL09T03C04 0.48 HMPREF1058_RS07935 peptide chain release factor 3 0.16 HMPREF1058_RS11160 master DNA invertase Mpi family serine-type recombinase — —
Phocaeicola dorei CL03T12C01 0.48 ABI39_RS00385 peptide chain release factor 3 0.17 ABI39_RS05885 master DNA invertase Mpi family serine-type recombinase — —
Bacteroides stercoris CC31F 0.47 HMPREF1181_RS05585 peptide chain release factor 3 0.16 HMPREF1181_RS10855 master DNA invertase Mpi family serine-type recombinase low > 56
Brevundimonas sp. GW460-12-10-14-LB2 0.46 A4249_RS15275 peptide chain release factor 3 0.37 A4249_RS16275 recombinase family protein low > 48

Not shown: 44 genomes with orthologs for RR42_RS37475 only; 5 genomes with orthologs for RR42_RS00040 only