| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_0429 | | membrane protein, putative | 1.0 | Psyr_4384 | | Multi antimicrobial extrusion protein MatE | 0.33 | 14 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_0429 | | membrane protein, putative | 1.00 | Psyr_4384 | | Multi antimicrobial extrusion protein MatE | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.73 | Pf1N1B4_1512 | | FIG021862: membrane protein, exporter | 0.74 | Pf1N1B4_1292 | | DNA-damage-inducible protein F | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.72 | Pf6N2E2_3721 | | FIG021862: membrane protein, exporter | 0.73 | Pf6N2E2_3500 | | DNA-damage-inducible protein F | low | > 103 |
| Pseudomonas sp. DMC3 | 0.72 | GFF3119 | | hypothetical protein | 0.75 | GFF3325 | | DNA damage-inducible protein F | low | > 89 |
| Pseudomonas orientalis W4I3 | 0.72 | QF045_RS05125 | | MMPL family transporter | 0.71 | QF045_RS06045 | | MATE family efflux transporter | low | > 93 |
| Pseudomonas lactucae CFBP13502 | 0.72 | GEMAOFIL_00646 | | hypothetical protein | 0.70 | GEMAOFIL_00834 | | DNA damage-inducible protein F | low | > 96 |
| Pseudomonas fluorescens GW456-L13 | 0.71 | PfGW456L13_245 | | FIG021862: membrane protein, exporter | 0.75 | PfGW456L13_40 | | DNA-damage-inducible protein F | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.71 | AO356_09190 | | hypothetical protein | 0.72 | AO356_08140 | | MATE family efflux transporter | low | > 104 |
| Pseudomonas simiae WCS417 | 0.71 | PS417_02065 | | membrane protein | 0.72 | PS417_03010 | | XRE family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.71 | PFLU_RS02110 | | MMPL family transporter | 0.69 | PFLU_RS03090 | | MATE family efflux transporter | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.71 | PFLU_RS02110 | | MMPL family transporter | 0.69 | PFLU_RS03090 | | MATE family efflux transporter | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.70 | AO353_12645 | | hypothetical protein | 0.71 | AO353_13735 | | MATE family efflux transporter | low | > 101 |
| Pseudomonas sp. SVBP6 | 0.69 | COO64_RS13165 | | MMPL family transporter | 0.66 | COO64_RS18420 | | MATE family efflux transporter | low | > 93 |
| Pseudomonas sp. RS175 | 0.69 | PFR28_05028 | | hypothetical protein | 0.69 | PFR28_05231 | | DNA damage-inducible protein F | low | > 88 |
| Pseudomonas sp. S08-1 | 0.49 | OH686_09935 | | membrane protein, exporter | 0.57 | OH686_07530 | | MATE efflux family protein | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.42 | Psest_3698 | | Predicted exporter | 0.67 | Psest_3364 | | putative efflux protein, MATE family | low | > 67 |
| Kangiella aquimarina DSM 16071 | 0.19 | B158DRAFT_0425 | | Predicted exporter | 0.38 | B158DRAFT_0674 | | putative efflux protein, MATE family | low | > 40 |
| Ralstonia solanacearum GMI1000 | 0.17 | RS_RS18895 | | membrane protein | 0.30 | RS_RS18520 | | MATE family efflux transporter | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.17 | QEN71_RS03850 | | MMPL family transporter | 0.32 | QEN71_RS04895 | | MATE family efflux transporter | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.16 | RR42_RS31215 | | membrane protein | 0.31 | RR42_RS09395 | | multidrug transporter MatE | low | > 128 |
| Burkholderia phytofirmans PsJN | 0.16 | BPHYT_RS15150 | | membrane protein | 0.30 | BPHYT_RS14080 | | multidrug transporter MatE | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.16 | H281DRAFT_03975 | | Predicted exporter | 0.29 | H281DRAFT_04426 | | multidrug resistance protein, MATE family | low | > 103 |
| Rahnella sp. WP5 | 0.15 | EX31_RS21260 | | MMPL family transporter | 0.35 | EX31_RS11850 | | MATE family efflux transporter DinF | low | > 89 |
| Serratia liquefaciens MT49 | 0.15 | IAI46_04080 | | MMPL family transporter | 0.35 | IAI46_23000 | | MATE family efflux transporter DinF | low | > 87 |
| Shewanella oneidensis MR-1 | 0.15 | SO4377 | | membrane protein, putative (NCBI ptt file) | 0.34 | SO4617 | dinF | DNA-damage-inducible protein F (NCBI ptt file) | low | > 76 |
| Enterobacter asburiae PDN3 | 0.15 | EX28DRAFT_4095 | | Predicted exporter | 0.32 | EX28DRAFT_4268 | | putative efflux protein, MATE family | 0.38 | 29 |
| Shewanella sp. ANA-3 | 0.15 | Shewana3_0332 | | hypothetical protein (RefSeq) | 0.32 | Shewana3_4001 | | MATE efflux family protein (RefSeq) | low | > 73 |
| Enterobacter sp. TBS_079 | 0.14 | MPMX20_04367 | | hypothetical protein | 0.33 | MPMX20_00260 | | DNA damage-inducible protein F | low | > 85 |
| Pantoea sp. MT58 | 0.14 | IAI47_12335 | | MMPL family transporter | 0.33 | IAI47_17885 | | MATE family efflux transporter DinF | low | > 76 |
| Shewanella loihica PV-4 | 0.13 | Shew_3520 | | hypothetical protein (RefSeq) | 0.33 | Shew_0107 | | MATE efflux family protein (RefSeq) | low | > 60 |
| Pantoea agglomerans CFBP13505 P0401 | 0.13 | PagCFBP13505_RS05005 | | hypothetical protein | 0.34 | PagCFBP13505_RS21210 | | MATE family efflux transporter DinF | low | > 74 |
| Shewanella amazonensis SB2B | 0.13 | Sama_3388 | | hypothetical protein (RefSeq) | 0.37 | Sama_3501 | | DNA-damage-inducible protein F (RefSeq) | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.09 | ABZR86_RS13555 | | MMPL family transporter | 0.57 | ABZR86_RS00490 | | MATE family efflux transporter | low | > 74 |
Not shown: 13 genomes with orthologs for Psyr_0429 only; 45 genomes with orthologs for Psyr_4384 only