Conservation of cofitness between Psyr_1547 and Psyr_4155 in Pseudomonas syringae pv. syringae B728a

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_1547 glycine cleavage system transcriptional repressor 1.0 Psyr_4155 Protein of unknown function DUF615 0.35 15
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_1547 glycine cleavage system transcriptional repressor 1.00 Psyr_4155 Protein of unknown function DUF615 low > 86
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_04535 glycine cleavage system protein R 0.90 AO356_07090 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_17665 glycine cleavage system protein R 0.90 AO353_05210 hypothetical protein low > 101
Pseudomonas simiae WCS417 0.92 PS417_07160 glycine cleavage system protein R 0.90 PS417_04290 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_3331 Glycine cleavage system transcriptional antiactivator GcvR 0.89 Pf1N1B4_1091 FIG138315: Putative alpha helix protein low > 87
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_2748 Glycine cleavage system transcriptional antiactivator GcvR 0.90 Pf6N2E2_3279 FIG138315: Putative alpha helix protein low > 103
Pseudomonas sp. RS175 0.91 PFR28_00698 Glycine cleavage system transcriptional repressor 0.90 PFR28_00162 hypothetical protein low > 88
Pseudomonas fluorescens SBW25 0.91 PFLU_RS07270 glycine cleavage system protein R 0.90 PFLU_RS04345 ribosome-associated protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS07270 glycine cleavage system protein R 0.90 PFLU_RS04345 ribosome-associated protein low > 109
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_4508 Glycine cleavage system transcriptional antiactivator GcvR 0.91 PfGW456L13_5025 FIG138315: Putative alpha helix protein low > 87
Pseudomonas stutzeri RCH2 0.86 Psest_1514 Glycine cleavage system regulatory protein 0.75 Psest_3319 Uncharacterized protein conserved in bacteria low > 67
Pseudomonas putida KT2440 0.81 PP_1236 putative Glycine cleavage system transcriptional repressor 0.81 PP_0941 putative ribosome associated protein low > 96
Pseudomonas sp. S08-1 0.80 OH686_19210 Glycine cleavage system transcriptional antiactivator GcvR 0.82 OH686_08575 UPF0307 protein YjgA low > 80
Rhodanobacter denitrificans MT42 0.31 LRK55_RS14795 glycine cleavage system protein R 0.27 LRK55_RS03135 ribosome biogenesis factor YjgA — —
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS15080 glycine cleavage system protein R 0.27 LRK54_RS03385 DUF615 domain-containing protein — —
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS00780 glycine cleavage system protein R 0.28 ABZR86_RS21710 ribosome biogenesis factor YjgA low > 74
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.3086.1 Glycine cleavage system transcriptional antiactivator GcvR 0.35 Xcc-8004.1884.1 FIG138315: Putative alpha helix protein — —
Lysobacter sp. OAE881 0.28 ABIE51_RS07990 glycine cleavage system protein R 0.32 ABIE51_RS06800 ribosome biogenesis factor YjgA low > 62
Shewanella loihica PV-4 0.15 Shew_1847 amino acid-binding ACT domain-containing protein (RefSeq) 0.17 Shew_0415 hypothetical protein (RefSeq) — —
Enterobacter asburiae PDN3 0.15 EX28DRAFT_0181 Glycine cleavage system regulatory protein 0.32 EX28DRAFT_3421 Uncharacterized protein conserved in bacteria — —
Rahnella sp. WP5 0.14 EX31_RS22735 glycine cleavage system transcriptional repressor 0.30 EX31_RS12315 ribosome-associated protein low > 89
Escherichia coli Nissle 1917 0.14 ECOLIN_RS14150 glycine cleavage system transcriptional repressor 0.31 ECOLIN_RS24565 ribosome biogenesis factor YjgA low > 55
Escherichia coli ECOR38 0.14 HEPCGN_21080 gcvR glycine cleavage system transcriptional repressor 0.31 HEPCGN_10130 yjgA ribosome-associated protein 0.71 16
Escherichia coli ECRC99 0.14 KEDOAH_06310 gcvR glycine cleavage system transcriptional repressor 0.31 KEDOAH_16225 yjgA ribosome-associated protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.14 OHPLBJKB_01250 Glycine cleavage system transcriptional repressor 0.31 OHPLBJKB_03801 hypothetical protein 0.52 17
Escherichia coli BL21 0.14 ECD_02371 transcriptional repressor, regulatory protein accessory to GcvA 0.31 ECD_04102 ribosome-associated UPF0307 family protein low > 61
Escherichia coli ECRC62 0.14 BNILDI_12380 gcvR glycine cleavage system transcriptional repressor 0.31 BNILDI_07320 yjgA ribosome-associated protein 0.73 44
Escherichia coli ECRC102 0.14 NIAGMN_19680 gcvR glycine cleavage system transcriptional repressor 0.31 NIAGMN_09780 yjgA ribosome-associated protein — —
Escherichia coli ECRC100 0.14 OKFHMN_21910 gcvR glycine cleavage system transcriptional repressor 0.31 OKFHMN_11930 yjgA ribosome-associated protein low > 80
Escherichia fergusonii Becca 0.14 EFB2_01407 Glycine cleavage system transcriptional repressor 0.31 EFB2_04299 hypothetical protein low > 86
Escherichia coli ECOR27 0.14 NOLOHH_13570 gcvR glycine cleavage system transcriptional repressor 0.31 NOLOHH_04190 yjgA ribosome-associated protein low > 75
Escherichia coli BW25113 0.14 b2479 gcvR transcriptional regulation of gcv operon (VIMSS) 0.31 b4234 yjgA hypothetical protein (NCBI) low > 76
Escherichia coli ECRC101 0.14 MCAODC_12440 gcvR glycine cleavage system transcriptional repressor 0.31 MCAODC_02435 yjgA ribosome-associated protein low > 87
Escherichia coli ECRC98 0.14 JDDGAC_25855 gcvR glycine cleavage system transcriptional repressor 0.31 JDDGAC_15570 yjgA ribosome-associated protein low > 86
Enterobacter sp. TBS_079 0.14 MPMX20_03341 Glycine cleavage system transcriptional repressor 0.33 MPMX20_00516 hypothetical protein — —
Erwinia tracheiphila SCR3 0.14 LU632_RS08320 glycine cleavage system transcriptional repressor 0.32 LU632_RS02140 ribosome-associated protein low > 74
Shewanella amazonensis SB2B 0.14 Sama_1909 glycine cleavage system transcriptional repressor, putative (RefSeq) 0.29 Sama_0481 hypothetical protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.14 SO1878 glycine cleavage system transcriptional repressor, putative (NCBI ptt file) 0.25 SO4079 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.14 Shewana3_1655 glycine cleavage system transcriptional repressor, putative (RefSeq) 0.25 Shewana3_3632 hypothetical protein (RefSeq) low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.13 GFF2179 Glycine cleavage system transcriptional antiactivator GcvR 0.31 GFF903 FIG138315: Putative alpha helix protein — —

Not shown: 1 genomes with orthologs for Psyr_1547 only; 17 genomes with orthologs for Psyr_4155 only