| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_0471 | | coproporphyrinogen III oxidase, anaerobic | 1.0 | Psyr_1610 | | ribosomal large subunit pseudouridine synthase A | 0.33 | 10 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_0471 | | coproporphyrinogen III oxidase, anaerobic | 1.00 | Psyr_1610 | | ribosomal large subunit pseudouridine synthase A | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.83 | Pf1N1B4_2334 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.91 | Pf1N1B4_3753 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.82 | AO353_08200 | | coproporphyrinogen III oxidase | 0.92 | AO353_02385 | | pseudouridine synthase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.81 | PfGW456L13_1003 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.90 | PfGW456L13_4194 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.81 | PS417_26760 | | oxidase | 0.89 | PS417_19475 | | pseudouridine synthase | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.81 | PFLU_RS28405 | | radical SAM family heme chaperone HemW | 0.90 | PFLU_RS21445 | | RluA family pseudouridine synthase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.81 | PFLU_RS28405 | | radical SAM family heme chaperone HemW | 0.90 | PFLU_RS21445 | | RluA family pseudouridine synthase | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.78 | AO356_13390 | | coproporphyrinogen III oxidase | 0.92 | AO356_19405 | | pseudouridine synthase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.78 | Pf6N2E2_4593 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.92 | Pf6N2E2_5794 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 103 |
| Pseudomonas sp. RS175 | 0.77 | PFR28_04249 | | Heme chaperone HemW | 0.92 | PFR28_03154 | | Dual-specificity RNA pseudouridine synthase RluA | low | > 88 |
| Pseudomonas sp. S08-1 | 0.74 | OH686_11020 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW | 0.88 | OH686_19760 | | LSU rRNA pseudouridine(746) synthase or tRNA pseudouridine(32) synthase | low | > 80 |
| Pseudomonas putida KT2440 | 0.73 | PP_5101 | | coproporphyrinogen/heterocyclic compound oxidase (aerobic) | 0.87 | PP_1731 | | 23S rRNA (746) and tRNA (32) pseudouridine synthase | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.71 | Psest_0276 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.86 | Psest_2948 | | pseudouridine synthase, RluA family | low | > 67 |
| Kangiella aquimarina DSM 16071 | 0.52 | B158DRAFT_0201 | | coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22) | 0.44 | B158DRAFT_1514 | | Pseudouridylate synthases, 23S RNA-specific | low | > 40 |
| Serratia liquefaciens MT49 | 0.52 | IAI46_21435 | | radical SAM family heme chaperone HemW | 0.46 | IAI46_03270 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | low | > 86 |
| Shewanella sp. ANA-3 | 0.51 | Shewana3_1188 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | 0.45 | Shewana3_0799 | | ribosomal large subunit pseudouridine synthase A (RefSeq) | low | > 73 |
| Pectobacterium carotovorum WPP14 | 0.51 | HER17_RS03785 | | radical SAM family heme chaperone HemW | 0.47 | HER17_RS02985 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | low | > 75 |
| Shewanella amazonensis SB2B | 0.51 | Sama_2483 | | oxygen-independent coproporphyrinogen III oxidase, putative (RefSeq) | 0.44 | Sama_0606 | | pseudouridylate synthase (RefSeq) | low | > 62 |
| Pantoea sp. MT58 | 0.51 | IAI47_03580 | | radical SAM family heme chaperone HemW | 0.50 | IAI47_16060 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | low | > 76 |
| Enterobacter sp. TBS_079 | 0.51 | MPMX20_03813 | | Heme chaperone HemW | 0.48 | MPMX20_00752 | | Dual-specificity RNA pseudouridine synthase RluA | low | > 85 |
| Escherichia coli ECOR38 | 0.51 | HEPCGN_18540 | hemW | radical SAM family heme chaperone HemW | 0.49 | HEPCGN_08795 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | low | > 87 |
| Escherichia coli BL21 | 0.51 | ECD_02785 | | HemN family putative oxidoreductase | 0.49 | ECD_00060 | | dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM-dependent | low | > 61 |
| Dickeya dianthicola 67-19 | 0.51 | HGI48_RS17370 | | radical SAM family heme chaperone HemW | 0.46 | HGI48_RS18175 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | low | > 71 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.51 | OHPLBJKB_00761 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR | 0.49 | OHPLBJKB_03600 | | Ribosomal large subunit pseudouridine synthase A | low | > 73 |
| Escherichia fergusonii Becca | 0.51 | EFB2_00947 | | Heme chaperone HemW | 0.49 | EFB2_03987 | | Dual-specificity RNA pseudouridine synthase RluA | low | > 86 |
| Escherichia coli ECRC101 | 0.51 | MCAODC_09755 | hemW | radical SAM family heme chaperone HemW | 0.48 | MCAODC_01320 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | low | > 87 |
| Escherichia coli ECRC62 | 0.51 | BNILDI_09685 | hemW | radical SAM family heme chaperone HemW | 0.49 | BNILDI_08455 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | low | > 75 |
| Enterobacter asburiae PDN3 | 0.51 | EX28DRAFT_2993 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.48 | EX28DRAFT_3650 | | pseudouridine synthase, RluA family | low | > 76 |
| Escherichia coli ECRC98 | 0.51 | JDDGAC_22865 | hemW | radical SAM family heme chaperone HemW | 0.48 | JDDGAC_14400 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | 0.78 | 86 |
| Escherichia coli ECRC102 | 0.51 | NIAGMN_17000 | hemW | radical SAM family heme chaperone HemW | 0.48 | NIAGMN_08655 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | — | — |
| Erwinia tracheiphila SCR3 | 0.51 | LU632_RS05445 | hemW | radical SAM family heme chaperone HemW | 0.44 | LU632_RS02800 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | — | — |
| Escherichia coli ECRC99 | 0.51 | KEDOAH_08905 | hemW | radical SAM family heme chaperone HemW | 0.48 | KEDOAH_17350 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.51 | GFF3058 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.49 | GFF184 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 78 |
| Escherichia coli ECRC100 | 0.51 | OKFHMN_19235 | hemW | radical SAM family heme chaperone HemW | 0.48 | OKFHMN_10805 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | low | > 80 |
| Escherichia coli ECOR27 | 0.50 | NOLOHH_11105 | hemW | radical SAM family heme chaperone HemW | 0.49 | NOLOHH_03150 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | low | > 75 |
| Escherichia coli BW25113 | 0.50 | b2955 | yggW | coproporphyrinogen III oxidase (NCBI) | 0.49 | b0058 | rluA | pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) (NCBI) | 0.21 | 38 |
| Dickeya dianthicola ME23 | 0.50 | DZA65_RS18460 | | radical SAM family heme chaperone HemW | 0.47 | DZA65_RS19315 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | low | > 75 |
| Escherichia coli Nissle 1917 | 0.50 | ECOLIN_RS16435 | | radical SAM family heme chaperone HemW | 0.49 | ECOLIN_RS00310 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | low | > 55 |
| Shewanella loihica PV-4 | 0.50 | Shew_1131 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | 0.46 | Shew_0783 | | pseudouridylate synthase (RefSeq) | — | — |
| Dickeya dadantii 3937 | 0.50 | DDA3937_RS17325 | | radical SAM family heme chaperone HemW | 0.47 | DDA3937_RS18240 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | low | > 74 |
| Rahnella sp. WP5 | 0.50 | EX31_RS02710 | | radical SAM family heme chaperone HemW | 0.48 | EX31_RS03750 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | low | > 89 |
| Klebsiella michiganensis M5al | 0.49 | BWI76_RS24120 | | YggW family oxidoreductase | 0.47 | BWI76_RS04565 | | bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA | low | > 92 |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_00939 | | Oxygen-independent coproporphyrinogen-III oxidase 1 | 0.46 | MIT1002_00658 | | Ribosomal large subunit pseudouridine synthase A | low | > 70 |
| Dechlorosoma suillum PS | 0.48 | Dsui_0491 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.43 | Dsui_3205 | | pseudouridine synthase, RluA family | low | > 51 |
| Variovorax sp. SCN45 | 0.46 | GFF2383 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW | 0.36 | GFF7036 | | LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28) | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.46 | GFF3256 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.44 | GFF3559 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 90 |
| Acinetobacter radioresistens SK82 | 0.44 | MPMX26_00308 | | Heme chaperone HemW | 0.40 | MPMX26_01026 | | Dual-specificity RNA pseudouridine synthase RluA | low | > 36 |
| Acidovorax sp. GW101-3H11 | 0.43 | Ac3H11_3672 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.40 | Ac3H11_174 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 79 |
| Phaeobacter inhibens DSM 17395 | 0.30 | PGA1_c35050 | | oxygen-independent coproporphyrinogen III oxidase HemN | 0.46 | PGA1_c33080 | | ribosomal large subunit pseudouridine synthase A | low | > 62 |
| Agrobacterium fabrum C58 | 0.29 | Atu0325 | | oxygen-independent coproporphyrinogen III oxidase | 0.46 | Atu4041 | | ribosomal large subunit pseudouridine synthase A | — | — |
| Dinoroseobacter shibae DFL-12 | 0.29 | Dshi_3460 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | 0.45 | Dshi_3106 | | pseudouridine synthase (RefSeq) | low | > 64 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.26 | A4249_RS12445 | | radical SAM family heme chaperone HemW | 0.25 | A4249_RS07880 | | RluA family pseudouridine synthase | low | > 48 |
Not shown: 46 genomes with orthologs for Psyr_0471 only; 0 genomes with orthologs for Psyr_1610 only