| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4129 | | NADH:ubiquinone oxidoreductase, membrane subunit L | 1.0 | PP_5309 | | oxidative and nitrosative stress transcriptional dual regulator | 0.41 | 20 |
| Pseudomonas sp. RS175 | 0.93 | PFR28_02637 | | NADH-quinone oxidoreductase subunit L | 0.90 | PFR28_04434 | | Hydrogen peroxide-inducible genes activator | — | — |
| Pseudomonas fluorescens SBW25 | 0.91 | PFLU_RS18665 | | NADH-quinone oxidoreductase subunit L | 0.88 | PFLU_RS29545 | | hydrogen peroxide-inducible genes activator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.91 | PFLU_RS18665 | | NADH-quinone oxidoreductase subunit L | 0.88 | PFLU_RS29545 | | hydrogen peroxide-inducible genes activator | low | > 109 |
| Pseudomonas simiae WCS417 | 0.91 | PS417_16625 | | NADH-quinone oxidoreductase subunit L | 0.89 | PS417_27865 | | LysR family transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.91 | AO353_27790 | | NADH-quinone oxidoreductase subunit L | 0.88 | AO353_09315 | | LysR family transcriptional regulator | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.90 | PfGW456L13_2623 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | 0.88 | PfGW456L13_773 | | Hydrogen peroxide-inducible genes activator | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.90 | AO356_22020 | | NADH-quinone oxidoreductase subunit L | 0.90 | AO356_12385 | | LysR family transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.89 | Pf6N2E2_267 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | 0.93 | Pf6N2E2_4353 | | Hydrogen peroxide-inducible genes activator | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.88 | Pf1N1B4_4030 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | 0.89 | Pf1N1B4_2106 | | Hydrogen peroxide-inducible genes activator | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.87 | Psyr_3207 | | NADH dehydrogenase subunit L | 0.92 | Psyr_0202 | | transcriptional regulator, LysR family | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.87 | Psyr_3207 | | NADH dehydrogenase subunit L | 0.92 | Psyr_0202 | | transcriptional regulator, LysR family | — | — |
| Pseudomonas sp. S08-1 | 0.76 | OH686_00105 | | NADH-ubiquinone oxidoreductase chain L | 0.85 | OH686_13510 | | Hydrogen peroxide-inducible genes activator | low | > 80 |
| Shewanella oneidensis MR-1 | 0.69 | SO1011 | nuoL | NADH dehydrogenase I, L subunit (NCBI ptt file) | 0.25 | SO1328 | | transcriptional regulator, LysR family (NCBI ptt file) | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.67 | HER17_RS07175 | | NADH-quinone oxidoreductase subunit L | 0.36 | HER17_RS00955 | | DNA-binding transcriptional regulator OxyR | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.67 | GFF1881 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | 0.35 | GFF2347 | | Hydrogen peroxide-inducible genes activator | low | > 78 |
| Pantoea sp. MT58 | 0.67 | IAI47_06410 | | NADH-quinone oxidoreductase subunit L | 0.34 | IAI47_00930 | | DNA-binding transcriptional regulator OxyR | low | > 76 |
| Escherichia coli ECOR27 | 0.67 | NOLOHH_14510 | nuoL | NADH-quinone oxidoreductase subunit L | 0.36 | NOLOHH_05700 | oxyR | DNA-binding transcriptional regulator OxyR | low | > 57 |
| Erwinia tracheiphila SCR3 | 0.67 | LU632_RS08015 | nuoL | NADH-quinone oxidoreductase subunit L | 0.34 | LU632_RS19590 | oxyR | DNA-binding transcriptional regulator OxyR | low | > 74 |
| Enterobacter asburiae PDN3 | 0.67 | EX28DRAFT_0332 | | proton-translocating NADH-quinone oxidoreductase, chain L | 0.36 | EX28DRAFT_4424 | | Transcriptional regulator | — | — |
| Enterobacter sp. TBS_079 | 0.67 | MPMX20_03208 | | NADH-quinone oxidoreductase subunit L | 0.36 | MPMX20_04519 | | Hydrogen peroxide-inducible genes activator | low | > 85 |
| Escherichia coli BL21 | 0.67 | ECD_02203 | | NADH:ubiquinone oxidoreductase, membrane subunit L | 0.36 | ECD_03846 | | oxidative and nitrosative stress transcriptional regulator | low | > 60 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.67 | OHPLBJKB_01428 | | NADH-quinone oxidoreductase subunit L | 0.36 | OHPLBJKB_04089 | | Hydrogen peroxide-inducible genes activator | low | > 73 |
| Escherichia coli Nissle 1917 | 0.67 | ECOLIN_RS13235 | | NADH-quinone oxidoreductase subunit L | 0.36 | ECOLIN_RS22870 | | DNA-binding transcriptional regulator OxyR | low | > 52 |
| Escherichia fergusonii Becca | 0.67 | EFB2_01581 | | NADH-quinone oxidoreductase subunit L | 0.36 | EFB2_04651 | | Hydrogen peroxide-inducible genes activator | low | > 86 |
| Escherichia coli ECOR38 | 0.67 | HEPCGN_22095 | nuoL | NADH-quinone oxidoreductase subunit L | 0.36 | HEPCGN_12210 | oxyR | DNA-binding transcriptional regulator OxyR | 0.85 | 77 |
| Escherichia coli ECRC101 | 0.67 | MCAODC_13930 | nuoL | NADH-quinone oxidoreductase subunit L | 0.36 | MCAODC_04065 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC99 | 0.67 | KEDOAH_05305 | nuoL | NADH-quinone oxidoreductase subunit L | 0.36 | KEDOAH_14595 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC98 | 0.67 | JDDGAC_26855 | nuoL | NADH-quinone oxidoreductase subunit L | 0.36 | JDDGAC_17190 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC102 | 0.67 | NIAGMN_20660 | nuoL | NADH-quinone oxidoreductase subunit L | 0.36 | NIAGMN_11315 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC101 | 0.67 | OKFHMN_22890 | nuoL | NADH-quinone oxidoreductase subunit L | 0.36 | OKFHMN_13565 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli BW25113 | 0.67 | b2278 | nuoL | NADH dehydrogenase subunit L (NCBI) | 0.36 | b3961 | oxyR | DNA-binding transcriptional dual regulator (NCBI) | 0.36 | 64 |
| Rahnella sp. WP5 | 0.67 | EX31_RS19385 | | NADH-quinone oxidoreductase subunit L | 0.35 | EX31_RS14170 | | DNA-binding transcriptional regulator OxyR | low | > 89 |
| Escherichia coli ECRC62 | 0.67 | BNILDI_13430 | nuoL | NADH-quinone oxidoreductase subunit L | 0.36 | BNILDI_05825 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Serratia liquefaciens MT49 | 0.66 | IAI46_17660 | | NADH-quinone oxidoreductase subunit L | 0.34 | IAI46_24475 | | DNA-binding transcriptional regulator OxyR | low | > 86 |
| Klebsiella michiganensis M5al | 0.65 | BWI76_RS20140 | | NADH-quinone oxidoreductase subunit L | 0.35 | BWI76_RS00865 | | DNA-binding transcriptional regulator OxyR | low | > 92 |
| Dickeya dianthicola ME23 | 0.65 | DZA65_RS14935 | | NADH-quinone oxidoreductase subunit L | 0.36 | DZA65_RS21450 | | DNA-binding transcriptional regulator OxyR | — | — |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS14285 | | NADH-quinone oxidoreductase subunit L | 0.36 | DDA3937_RS00970 | | DNA-binding transcriptional regulator OxyR | — | — |
| Dickeya dianthicola 67-19 | 0.65 | HGI48_RS14260 | | NADH-quinone oxidoreductase subunit L | 0.36 | HGI48_RS20405 | | DNA-binding transcriptional regulator OxyR | low | > 71 |
| Acinetobacter radioresistens SK82 | 0.53 | MPMX26_02545 | | NADH-quinone oxidoreductase subunit L | 0.27 | MPMX26_02334 | | Hydrogen peroxide-inducible genes activator | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.45 | CA264_04220 | | NADH-quinone oxidoreductase subunit L | 0.30 | CA264_13765 | | DNA-binding transcriptional regulator OxyR | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.32 | CA265_RS23590 | | NADH-quinone oxidoreductase subunit L | 0.29 | CA265_RS19680 | | DNA-binding transcriptional regulator OxyR | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.31 | ABZR88_RS17115 | | NADH-quinone oxidoreductase subunit L | 0.29 | ABZR88_RS18535 | | hydrogen peroxide-inducible genes activator | — | — |
| Azospirillum brasilense Sp245 | 0.29 | AZOBR_RS07220 | | NADH:ubiquinone oxidoreductase subunit L | 0.37 | AZOBR_RS31340 | | LysR family transcriptional regulator | — | — |
| Azospirillum sp. SherDot2 | 0.29 | MPMX19_01735 | | NADH-quinone oxidoreductase subunit L | 0.37 | MPMX19_04930 | | Hydrogen peroxide-inducible genes activator | — | — |
| Magnetospirillum magneticum AMB-1 | 0.29 | AMB_RS13955 | | NADH-quinone oxidoreductase subunit L | 0.31 | AMB_RS03045 | | hydrogen peroxide-inducible genes activator | — | — |
| Sinorhizobium meliloti 1021 | 0.28 | SMc01925 | | NADH dehydrogenase subunit L | 0.30 | SMc00818 | | hydrogen peroxide-inducible genes activator (morphology and AUTO-aggregation control protein) | — | — |
| Variovorax sp. OAS795 | 0.28 | ABID97_RS20440 | | NADH-quinone oxidoreductase subunit L | 0.46 | ABID97_RS01570 | | LysR substrate-binding domain-containing protein | — | — |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A1566 | | NADH-plastoquinone oxidoreductase, chain 5 (NCBI) | 0.32 | Rru_A2782 | | Transcriptional Regulator, LysR family (NCBI) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.28 | Dshi_1327 | | proton-translocating NADH-quinone oxidoreductase, chain L (RefSeq) | 0.29 | Dshi_0727 | | transcriptional regulator, LysR family (RefSeq) | — | — |
| Rhizobium sp. OAE497 | 0.26 | ABIE40_RS07240 | | NADH-quinone oxidoreductase subunit L | 0.24 | ABIE40_RS15045 | | hydrogen peroxide-inducible genes activator | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.26 | Ga0059261_0698 | | NADH dehydrogenase subunit L (EC 1.6.5.3) | 0.31 | Ga0059261_0159 | | Transcriptional regulator | — | — |
| Bosea sp. OAE506 | 0.25 | ABIE41_RS17885 | | NADH-quinone oxidoreductase subunit L | 0.29 | ABIE41_RS01195 | | hydrogen peroxide-inducible genes activator | — | — |
| Bacteroides stercoris CC31F | 0.24 | HMPREF1181_RS09035 | | NADH-quinone oxidoreductase subunit L | 0.27 | HMPREF1181_RS02160 | | hydrogen peroxide-inducible genes activator | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.24 | BACOVA_04855 | | proton-translocating NADH-quinone oxidoreductase, chain L | 0.28 | BACOVA_05567 | | LysR substrate binding domain protein | low | > 94 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.23 | BT4060 | | NADH dehydrogenase I, chain L (NCBI ptt file) | 0.28 | BT4716 | | redox-sensitive transcriptional activator (NCBI ptt file) | low | > 81 |
| Phocaeicola dorei CL03T12C01 | 0.23 | ABI39_RS08505 | | NADH-quinone oxidoreductase subunit L | 0.27 | ABI39_RS06075 | | hydrogen peroxide-inducible genes activator | low | > 72 |
Not shown: 3 genomes with orthologs for PP_4129 only; 38 genomes with orthologs for PP_5309 only