| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_1215 | | Crossover junction endodeoxyribonuclease RuvC | 1.0 | PP_4129 | | NADH:ubiquinone oxidoreductase, membrane subunit L | 0.29 | 18 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.90 | Psyr_1408 | | Holliday junction endonuclease RuvC | 0.87 | Psyr_3207 | | NADH dehydrogenase subunit L | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.90 | Psyr_1408 | | Holliday junction endonuclease RuvC | 0.87 | Psyr_3207 | | NADH dehydrogenase subunit L | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.89 | Pf1N1B4_639 | | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) | 0.88 | Pf1N1B4_4030 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.88 | AO353_03590 | | crossover junction endodeoxyribonuclease RuvC | 0.91 | AO353_27790 | | NADH-quinone oxidoreductase subunit L | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.87 | Pf6N2E2_5535 | | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) | 0.89 | Pf6N2E2_267 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.87 | AO356_18015 | | crossover junction endodeoxyribonuclease RuvC | 0.90 | AO356_22020 | | NADH-quinone oxidoreductase subunit L | — | — |
| Pseudomonas sp. RS175 | 0.87 | PFR28_03414 | | Crossover junction endodeoxyribonuclease RuvC | 0.93 | PFR28_02637 | | NADH-quinone oxidoreductase subunit L | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.87 | PfGW456L13_1851 | | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) | 0.90 | PfGW456L13_2623 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.86 | PS417_22455 | | crossover junction endodeoxyribonuclease RuvC | 0.91 | PS417_16625 | | NADH-quinone oxidoreductase subunit L | — | — |
| Pseudomonas fluorescens SBW25 | 0.86 | PFLU_RS24095 | | crossover junction endodeoxyribonuclease RuvC | 0.91 | PFLU_RS18665 | | NADH-quinone oxidoreductase subunit L | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.86 | PFLU_RS24095 | | crossover junction endodeoxyribonuclease RuvC | 0.91 | PFLU_RS18665 | | NADH-quinone oxidoreductase subunit L | 0.39 | 35 |
| Pseudomonas sp. S08-1 | 0.85 | OH686_19125 | | crossover junction endodeoxyribonuclease RuvC | 0.76 | OH686_00105 | | NADH-ubiquinone oxidoreductase chain L | low | > 80 |
| Shewanella oneidensis MR-1 | 0.52 | SO2431 | ruvC | crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) | 0.69 | SO1011 | nuoL | NADH dehydrogenase I, L subunit (NCBI ptt file) | low | > 76 |
| Dickeya dianthicola 67-19 | 0.50 | HGI48_RS10100 | | crossover junction endodeoxyribonuclease RuvC | 0.65 | HGI48_RS14260 | | NADH-quinone oxidoreductase subunit L | — | — |
| Dickeya dianthicola ME23 | 0.50 | DZA65_RS10515 | | crossover junction endodeoxyribonuclease RuvC | 0.65 | DZA65_RS14935 | | NADH-quinone oxidoreductase subunit L | — | — |
| Dickeya dadantii 3937 | 0.50 | DDA3937_RS10070 | | crossover junction endodeoxyribonuclease RuvC | 0.65 | DDA3937_RS14285 | | NADH-quinone oxidoreductase subunit L | — | — |
| Serratia liquefaciens MT49 | 0.50 | IAI46_14630 | | crossover junction endodeoxyribonuclease RuvC | 0.66 | IAI46_17660 | | NADH-quinone oxidoreductase subunit L | — | — |
| Pantoea sp. MT58 | 0.49 | IAI47_08440 | | crossover junction endodeoxyribonuclease RuvC | 0.67 | IAI47_06410 | | NADH-quinone oxidoreductase subunit L | low | > 76 |
| Enterobacter sp. TBS_079 | 0.49 | MPMX20_02768 | | Crossover junction endodeoxyribonuclease RuvC | 0.67 | MPMX20_03208 | | NADH-quinone oxidoreductase subunit L | low | > 85 |
| Pectobacterium carotovorum WPP14 | 0.49 | HER17_RS11850 | | crossover junction endodeoxyribonuclease RuvC | 0.67 | HER17_RS07175 | | NADH-quinone oxidoreductase subunit L | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.48 | LU632_RS13420 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.67 | LU632_RS08015 | nuoL | NADH-quinone oxidoreductase subunit L | — | — |
| Rahnella sp. WP5 | 0.48 | EX31_RS11680 | | crossover junction endodeoxyribonuclease RuvC | 0.67 | EX31_RS19385 | | NADH-quinone oxidoreductase subunit L | — | — |
| Acinetobacter radioresistens SK82 | 0.48 | MPMX26_01780 | | Crossover junction endodeoxyribonuclease RuvC | 0.53 | MPMX26_02545 | | NADH-quinone oxidoreductase subunit L | — | — |
| Enterobacter asburiae PDN3 | 0.48 | EX28DRAFT_0694 | | Holliday junction endonuclease RuvC (EC 3.1.22.4) | 0.67 | EX28DRAFT_0332 | | proton-translocating NADH-quinone oxidoreductase, chain L | — | — |
| Escherichia coli ECRC101 | 0.48 | MCAODC_19140 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.67 | MCAODC_13930 | nuoL | NADH-quinone oxidoreductase subunit L | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.48 | OHPLBJKB_01865 | | Crossover junction endodeoxyribonuclease RuvC | 0.67 | OHPLBJKB_01428 | | NADH-quinone oxidoreductase subunit L | — | — |
| Escherichia coli ECOR38 | 0.48 | HEPCGN_04675 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.67 | HEPCGN_22095 | nuoL | NADH-quinone oxidoreductase subunit L | — | — |
| Escherichia fergusonii Becca | 0.48 | EFB2_02079 | | Crossover junction endodeoxyribonuclease RuvC | 0.67 | EFB2_01581 | | NADH-quinone oxidoreductase subunit L | — | — |
| Escherichia coli Nissle 1917 | 0.48 | ECOLIN_RS10375 | | crossover junction endodeoxyribonuclease RuvC | 0.67 | ECOLIN_RS13235 | | NADH-quinone oxidoreductase subunit L | — | — |
| Escherichia coli ECRC102 | 0.48 | NIAGMN_01795 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.67 | NIAGMN_20660 | nuoL | NADH-quinone oxidoreductase subunit L | — | — |
| Escherichia coli ECOR27 | 0.48 | NOLOHH_16710 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.67 | NOLOHH_14510 | nuoL | NADH-quinone oxidoreductase subunit L | — | — |
| Klebsiella michiganensis M5al | 0.48 | BWI76_RS18155 | | crossover junction endodeoxyribonuclease RuvC | 0.65 | BWI76_RS20140 | | NADH-quinone oxidoreductase subunit L | — | — |
| Escherichia coli ECRC99 | 0.48 | KEDOAH_01840 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.67 | KEDOAH_05305 | nuoL | NADH-quinone oxidoreductase subunit L | — | — |
| Escherichia coli ECRC101 | 0.48 | OKFHMN_26265 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.67 | OKFHMN_22890 | nuoL | NADH-quinone oxidoreductase subunit L | — | — |
| Escherichia coli BL21 | 0.48 | ECD_01834 | | component of RuvABC resolvasome, endonuclease | 0.67 | ECD_02203 | | NADH:ubiquinone oxidoreductase, membrane subunit L | — | — |
| Escherichia coli BW25113 | 0.48 | b1863 | ruvC | Holliday junction resolvase (NCBI) | 0.67 | b2278 | nuoL | NADH dehydrogenase subunit L (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.48 | BNILDI_15500 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.67 | BNILDI_13430 | nuoL | NADH-quinone oxidoreductase subunit L | — | — |
| Escherichia coli ECRC98 | 0.48 | JDDGAC_00840 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.67 | JDDGAC_26855 | nuoL | NADH-quinone oxidoreductase subunit L | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.48 | GFF1644 | | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) | 0.67 | GFF1881 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | — | — |
| Variovorax sp. OAS795 | 0.38 | ABID97_RS06275 | | crossover junction endodeoxyribonuclease RuvC | 0.28 | ABID97_RS20440 | | NADH-quinone oxidoreductase subunit L | — | — |
| Bosea sp. OAE506 | 0.34 | ABIE41_RS09470 | | crossover junction endodeoxyribonuclease RuvC | 0.25 | ABIE41_RS17885 | | NADH-quinone oxidoreductase subunit L | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.34 | CA264_03880 | | crossover junction endodeoxyribonuclease RuvC | 0.45 | CA264_04220 | | NADH-quinone oxidoreductase subunit L | — | — |
| Rhodospirillum rubrum S1H | 0.33 | Rru_A1087 | | Crossover junction endodeoxyribonuclease RuvC (NCBI) | 0.28 | Rru_A1566 | | NADH-plastoquinone oxidoreductase, chain 5 (NCBI) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.32 | AMB_RS16260 | | crossover junction endodeoxyribonuclease RuvC | 0.29 | AMB_RS13955 | | NADH-quinone oxidoreductase subunit L | — | — |
| Dinoroseobacter shibae DFL-12 | 0.32 | Dshi_1103 | | crossover junction endodeoxyribonuclease RuvC (RefSeq) | 0.28 | Dshi_1327 | | proton-translocating NADH-quinone oxidoreductase, chain L (RefSeq) | — | — |
| Rhizobium sp. OAE497 | 0.30 | ABIE40_RS15730 | | crossover junction endodeoxyribonuclease RuvC | 0.26 | ABIE40_RS07240 | | NADH-quinone oxidoreductase subunit L | — | — |
| Sinorhizobium meliloti 1021 | 0.30 | SMc03967 | | Holliday junction resolvase | 0.28 | SMc01925 | | NADH dehydrogenase subunit L | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.29 | HMPREF1058_RS01800 | | crossover junction endodeoxyribonuclease RuvC | 0.23 | HMPREF1058_RS13300 | | NADH-quinone oxidoreductase subunit L | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.29 | ABI39_RS15265 | | crossover junction endodeoxyribonuclease RuvC | 0.23 | ABI39_RS08505 | | NADH-quinone oxidoreductase subunit L | low | > 72 |
| Bacteroides stercoris CC31F | 0.29 | HMPREF1181_RS05370 | | crossover junction endodeoxyribonuclease RuvC | 0.24 | HMPREF1181_RS09035 | | NADH-quinone oxidoreductase subunit L | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.29 | BACOVA_04396 | | crossover junction endodeoxyribonuclease RuvC | 0.24 | BACOVA_04855 | | proton-translocating NADH-quinone oxidoreductase, chain L | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.28 | BT_1664 | ruvC | Holliday junction resolvase (RefSeq) | 0.23 | BT4060 | | NADH dehydrogenase I, chain L (NCBI ptt file) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.24 | Ga0059261_0822 | | Holliday junction endonuclease RuvC (EC 3.1.22.4) | 0.26 | Ga0059261_0698 | | NADH dehydrogenase subunit L (EC 1.6.5.3) | — | — |
| Synechococcus elongatus PCC 7942 | 0.19 | Synpcc7942_0798 | ruvC | Holliday junction resolvase | 0.23 | Synpcc7942_1977 | ndhF1 | NAD(P)H-quinone oxidoreductase subunit F | — | — |
Not shown: 39 genomes with orthologs for PP_1215 only; 5 genomes with orthologs for PP_4129 only