| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4129 | | NADH:ubiquinone oxidoreductase, membrane subunit L | 1.0 | PP_2302 | | DNA-binding, ATP-dependent protease | 0.42 | 19 |
| Pseudomonas sp. RS175 | 0.93 | PFR28_02637 | | NADH-quinone oxidoreductase subunit L | 0.94 | PFR28_01230 | | Lon protease | — | — |
| Pseudomonas fluorescens SBW25 | 0.91 | PFLU_RS18665 | | NADH-quinone oxidoreductase subunit L | 0.94 | PFLU_RS19160 | | endopeptidase La | 0.59 | 47 |
| Pseudomonas fluorescens SBW25-INTG | 0.91 | PFLU_RS18665 | | NADH-quinone oxidoreductase subunit L | 0.94 | PFLU_RS19160 | | endopeptidase La | low | > 109 |
| Pseudomonas simiae WCS417 | 0.91 | PS417_16625 | | NADH-quinone oxidoreductase subunit L | 0.94 | PS417_17225 | | DNA-binding protein | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.91 | AO353_27790 | | NADH-quinone oxidoreductase subunit L | 0.94 | AO353_20185 | | DNA-binding protein | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.90 | PfGW456L13_2623 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | 0.94 | PfGW456L13_2554 | | ATP-dependent protease La (EC 3.4.21.53) Type I | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.90 | AO356_22020 | | NADH-quinone oxidoreductase subunit L | 0.94 | AO356_01740 | | DNA-binding protein | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.89 | Pf6N2E2_267 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | 0.94 | Pf6N2E2_2216 | | ATP-dependent protease La (EC 3.4.21.53) Type I | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.88 | Pf1N1B4_4030 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | 0.94 | Pf1N1B4_3947 | | ATP-dependent protease La (EC 3.4.21.53) Type I | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.87 | Psyr_3207 | | NADH dehydrogenase subunit L | 0.93 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.87 | Psyr_3207 | | NADH dehydrogenase subunit L | 0.93 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | — | — |
| Pseudomonas sp. S08-1 | 0.76 | OH686_00105 | | NADH-ubiquinone oxidoreductase chain L | 0.88 | OH686_03635 | | endopeptidase La | 0.70 | 48 |
| Shewanella oneidensis MR-1 | 0.69 | SO1011 | nuoL | NADH dehydrogenase I, L subunit (NCBI ptt file) | 0.68 | SO1796 | lon | ATP-dependent protease La (NCBI ptt file) | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.67 | HER17_RS07175 | | NADH-quinone oxidoreductase subunit L | 0.69 | HER17_RS15840 | | endopeptidase La | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.67 | GFF1881 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | 0.68 | GFF4355 | | ATP-dependent protease La (EC 3.4.21.53) Type I | low | > 78 |
| Escherichia coli ECOR27 | 0.67 | NOLOHH_14510 | nuoL | NADH-quinone oxidoreductase subunit L | 0.68 | NOLOHH_01255 | lon_P403L | Lon protease | low | > 57 |
| Pantoea sp. MT58 | 0.67 | IAI47_06410 | | NADH-quinone oxidoreductase subunit L | 0.67 | IAI47_14645 | | endopeptidase La | — | — |
| Erwinia tracheiphila SCR3 | 0.67 | LU632_RS08015 | nuoL | NADH-quinone oxidoreductase subunit L | 0.68 | LU632_RS18335 | lon | endopeptidase La | — | — |
| Enterobacter sp. TBS_079 | 0.67 | MPMX20_03208 | | NADH-quinone oxidoreductase subunit L | 0.67 | MPMX20_01030 | | Lon protease | low | > 85 |
| Escherichia coli BL21 | 0.67 | ECD_02203 | | NADH:ubiquinone oxidoreductase, membrane subunit L | 0.68 | ECD_00391 | | DNA-binding ATP-dependent protease La | low | > 60 |
| Enterobacter asburiae PDN3 | 0.67 | EX28DRAFT_0332 | | proton-translocating NADH-quinone oxidoreductase, chain L | 0.67 | EX28DRAFT_2531 | | endopeptidase La | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.67 | OHPLBJKB_01428 | | NADH-quinone oxidoreductase subunit L | 0.68 | OHPLBJKB_03234 | | Lon protease | 0.51 | 7 |
| Escherichia coli ECRC102 | 0.67 | NIAGMN_20660 | nuoL | NADH-quinone oxidoreductase subunit L | 0.68 | NIAGMN_06375 | | Lon protease | — | — |
| Escherichia coli ECOR38 | 0.67 | HEPCGN_22095 | nuoL | NADH-quinone oxidoreductase subunit L | 0.68 | HEPCGN_06935 | lon_P403L | Lon protease | 0.85 | 70 |
| Escherichia coli ECRC99 | 0.67 | KEDOAH_05305 | nuoL | NADH-quinone oxidoreductase subunit L | 0.68 | KEDOAH_19645 | | Lon protease | — | — |
| Escherichia fergusonii Becca | 0.67 | EFB2_01581 | | NADH-quinone oxidoreductase subunit L | 0.68 | EFB2_03618 | | Lon protease | low | > 86 |
| Escherichia coli ECRC98 | 0.67 | JDDGAC_26855 | nuoL | NADH-quinone oxidoreductase subunit L | 0.68 | JDDGAC_11975 | | Lon protease | — | — |
| Escherichia coli Nissle 1917 | 0.67 | ECOLIN_RS13235 | | NADH-quinone oxidoreductase subunit L | 0.68 | ECOLIN_RS02635 | | endopeptidase La | low | > 52 |
| Escherichia coli ECRC101 | 0.67 | OKFHMN_22890 | nuoL | NADH-quinone oxidoreductase subunit L | 0.68 | OKFHMN_08320 | | Lon protease | — | — |
| Escherichia coli ECRC101 | 0.67 | MCAODC_13930 | nuoL | NADH-quinone oxidoreductase subunit L | 0.68 | MCAODC_27545 | | Lon protease | — | — |
| Escherichia coli BW25113 | 0.67 | b2278 | nuoL | NADH dehydrogenase subunit L (NCBI) | 0.68 | b0439 | lon | DNA-binding ATP-dependent protease La (NCBI) | 0.37 | 60 |
| Escherichia coli ECRC62 | 0.67 | BNILDI_13430 | nuoL | NADH-quinone oxidoreductase subunit L | 0.68 | BNILDI_22670 | lon_P403L | Lon protease | — | — |
| Rahnella sp. WP5 | 0.67 | EX31_RS19385 | | NADH-quinone oxidoreductase subunit L | 0.68 | EX31_RS22255 | | endopeptidase La | low | > 89 |
| Serratia liquefaciens MT49 | 0.66 | IAI46_17660 | | NADH-quinone oxidoreductase subunit L | 0.68 | IAI46_05020 | | endopeptidase La | low | > 86 |
| Klebsiella michiganensis M5al | 0.65 | BWI76_RS20140 | | NADH-quinone oxidoreductase subunit L | 0.68 | BWI76_RS06535 | | endopeptidase La | low | > 92 |
| Dickeya dianthicola ME23 | 0.65 | DZA65_RS14935 | | NADH-quinone oxidoreductase subunit L | 0.69 | DZA65_RS06020 | | endopeptidase La | — | — |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS14285 | | NADH-quinone oxidoreductase subunit L | 0.69 | DDA3937_RS05650 | | endopeptidase La | — | — |
| Dickeya dianthicola 67-19 | 0.65 | HGI48_RS14260 | | NADH-quinone oxidoreductase subunit L | 0.69 | HGI48_RS05695 | | endopeptidase La | low | > 71 |
| Acinetobacter radioresistens SK82 | 0.53 | MPMX26_02545 | | NADH-quinone oxidoreductase subunit L | 0.55 | MPMX26_02299 | | Lon protease | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.45 | CA264_04220 | | NADH-quinone oxidoreductase subunit L | 0.43 | CA264_00045 | | endopeptidase La | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.32 | CA265_RS23590 | | NADH-quinone oxidoreductase subunit L | 0.42 | CA265_RS14555 | | endopeptidase La | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.31 | ABZR88_RS17115 | | NADH-quinone oxidoreductase subunit L | 0.43 | ABZR88_RS15670 | | endopeptidase La | — | — |
| Azospirillum brasilense Sp245 | 0.29 | AZOBR_RS07220 | | NADH:ubiquinone oxidoreductase subunit L | 0.63 | AZOBR_RS07145 | | peptidase | — | — |
| Azospirillum sp. SherDot2 | 0.29 | MPMX19_01735 | | NADH-quinone oxidoreductase subunit L | 0.62 | MPMX19_01545 | | Lon protease | — | — |
| Magnetospirillum magneticum AMB-1 | 0.29 | AMB_RS13955 | | NADH-quinone oxidoreductase subunit L | 0.63 | AMB_RS14035 | | endopeptidase La | — | — |
| Sinorhizobium meliloti 1021 | 0.28 | SMc01925 | | NADH dehydrogenase subunit L | 0.60 | SMc01905 | | ATP-dependent protease LA protein | — | — |
| Variovorax sp. OAS795 | 0.28 | ABID97_RS20440 | | NADH-quinone oxidoreductase subunit L | 0.66 | ABID97_RS17590 | | endopeptidase La | — | — |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A1566 | | NADH-plastoquinone oxidoreductase, chain 5 (NCBI) | 0.62 | Rru_A1552 | | Peptidase S16, ATP-dependent protease La (NCBI) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.28 | Dshi_1327 | | proton-translocating NADH-quinone oxidoreductase, chain L (RefSeq) | 0.59 | Dshi_1777 | | ATP-dependent protease La (RefSeq) | — | — |
| Rhizobium sp. OAE497 | 0.26 | ABIE40_RS07240 | | NADH-quinone oxidoreductase subunit L | 0.60 | ABIE40_RS07100 | | endopeptidase La | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.26 | Ga0059261_0698 | | NADH dehydrogenase subunit L (EC 1.6.5.3) | 0.57 | Ga0059261_0102 | | endopeptidase La | — | — |
| Bosea sp. OAE506 | 0.25 | ABIE41_RS17885 | | NADH-quinone oxidoreductase subunit L | 0.59 | ABIE41_RS18050 | | endopeptidase La | — | — |
| Bacteroides stercoris CC31F | 0.24 | HMPREF1181_RS09035 | | NADH-quinone oxidoreductase subunit L | 0.40 | HMPREF1181_RS14340 | | endopeptidase La | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.24 | BACOVA_04855 | | proton-translocating NADH-quinone oxidoreductase, chain L | 0.39 | BACOVA_02571 | | endopeptidase La | low | > 94 |
| Phocaeicola vulgatus CL09T03C04 | 0.23 | HMPREF1058_RS13300 | | NADH-quinone oxidoreductase subunit L | 0.39 | HMPREF1058_RS01210 | | endopeptidase La | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.23 | ABI39_RS08505 | | NADH-quinone oxidoreductase subunit L | 0.39 | ABI39_RS16520 | | endopeptidase La | low | > 72 |
Not shown: 3 genomes with orthologs for PP_4129 only; 41 genomes with orthologs for PP_2302 only