Conservation of cofitness between PP_4964 and PP_1783 in Pseudomonas putida KT2440

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4964 D-erythrose 4-phosphate dehydrogenase 1.0 PP_1783 dTDP-glucose pyrophosphorylase 0.43 5
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS28090 erythrose-4-phosphate dehydrogenase 0.67 PFLU_RS01420 glucose-1-phosphate thymidylyltransferase RfbA — —
Pseudomonas fluorescens SBW25 0.90 PFLU_RS28090 erythrose-4-phosphate dehydrogenase 0.67 PFLU_RS01420 glucose-1-phosphate thymidylyltransferase RfbA — —
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_13685 glyceraldehyde-3-phosphate dehydrogenase 0.66 AO356_10045 glucose-1-phosphate thymidylyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_2398 D-erythrose-4-phosphate dehydrogenase 0.71 Pf1N1B4_341 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_4656 D-erythrose-4-phosphate dehydrogenase 0.67 Pf6N2E2_3879 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_07950 glyceraldehyde-3-phosphate dehydrogenase 0.66 AO353_11880 glucose-1-phosphate thymidylyltransferase — —
Pseudomonas sp. RS175 0.89 PFR28_04187 D-erythrose-4-phosphate dehydrogenase 0.67 PFR28_04893 Glucose-1-phosphate thymidylyltransferase 2 — —
Pseudomonas simiae WCS417 0.88 PS417_26435 glyceraldehyde-3-phosphate dehydrogenase 0.68 PS417_01325 glucose-1-phosphate thymidylyltransferase — —
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_1065 D-erythrose-4-phosphate dehydrogenase 0.70 PfGW456L13_2199 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Pseudomonas sp. S08-1 0.87 OH686_10765 erythrose-4-phosphate dehydrogenase 0.68 OH686_14375 glucose-1-phosphate thymidylyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_4791 D-erythrose-4-phosphate dehydrogenase 0.91 Psyr_0924 Glucose-1-phosphate thymidylyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_4791 D-erythrose-4-phosphate dehydrogenase 0.91 Psyr_0924 Glucose-1-phosphate thymidylyltransferase — —
Pseudomonas stutzeri RCH2 0.83 Psest_0329 erythrose-4-phosphate dehydrogenase 0.67 Psest_4263 glucose-1-phosphate thymidylyltransferase, short form — —
Dechlorosoma suillum PS 0.59 Dsui_1558 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 0.74 Dsui_1950 glucose-1-phosphate thymidylyltransferase, short form — —
Marinobacter adhaerens HP15 0.56 HP15_2912 glyceraldehyde 3-phosphate dehydrogenase, type I 0.66 HP15_p187g50 glucose-1-phosphate thymidylyltransferase 1 — —
Castellaniella sp019104865 MT123 0.54 ABCV34_RS03650 glyceraldehyde 3-phosphate dehydrogenase NAD-binding domain-containing protein 0.76 ABCV34_RS13015 glucose-1-phosphate thymidylyltransferase RfbA low > 48
Pantoea sp. MT58 0.51 IAI47_03685 erythrose-4-phosphate dehydrogenase 0.65 IAI47_18495 glucose-1-phosphate thymidylyltransferase RfbA low > 76
Pectobacterium carotovorum WPP14 0.51 HER17_RS02685 erythrose-4-phosphate dehydrogenase 0.66 HER17_RS14595 glucose-1-phosphate thymidylyltransferase RfbA — —
Rahnella sp. WP5 0.51 EX31_RS21405 erythrose-4-phosphate dehydrogenase 0.65 EX31_RS11520 glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli Nissle 1917 0.51 ECOLIN_RS16265 erythrose-4-phosphate dehydrogenase 0.64 ECOLIN_RS21750 glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli ECRC102 0.51 NIAGMN_17150 epd erythrose-4-phosphate dehydrogenase 0.64 NIAGMN_12310 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli ECRC62 0.51 BNILDI_09835 epd erythrose-4-phosphate dehydrogenase 0.64 BNILDI_04835 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli ECRC98 0.51 JDDGAC_23015 epd erythrose-4-phosphate dehydrogenase 0.64 JDDGAC_18180 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli ECOR38 0.51 HEPCGN_18695 epd erythrose-4-phosphate dehydrogenase 0.76 HEPCGN_03115 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli BL21 0.51 ECD_02758 D-erythrose 4-phosphate dehydrogenase 0.76 ECD_01945 glucose-1-phosphate thymidylyltransferase — —
Escherichia coli BW25113 0.51 b2927 epd D-erythrose 4-phosphate dehydrogenase (NCBI) 0.75 b2039 rfbA glucose-1-phosphate thymidylyltransferase (NCBI) low > 76
Enterobacter sp. TBS_079 0.51 MPMX20_03779 D-erythrose-4-phosphate dehydrogenase 0.74 MPMX20_03012 Glucose-1-phosphate thymidylyltransferase 1 low > 85
Escherichia coli ECRC99 0.51 KEDOAH_08755 epd erythrose-4-phosphate dehydrogenase 0.64 KEDOAH_13595 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli ECRC101 0.51 OKFHMN_19385 epd erythrose-4-phosphate dehydrogenase 0.64 OKFHMN_14555 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_00789 D-erythrose-4-phosphate dehydrogenase 0.67 OHPLBJKB_01661 Glucose-1-phosphate thymidylyltransferase 2 low > 73
Escherichia coli ECRC101 0.51 MCAODC_09905 epd erythrose-4-phosphate dehydrogenase 0.64 MCAODC_05060 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli ECOR27 0.51 NOLOHH_11295 epd erythrose-4-phosphate dehydrogenase 0.64 NOLOHH_06690 rfbA glucose-1-phosphate thymidylyltransferase RfbA low > 57
Dickeya dianthicola 67-19 0.50 HGI48_RS18445 erythrose-4-phosphate dehydrogenase 0.66 HGI48_RS06760 glucose-1-phosphate thymidylyltransferase RfbA low > 71
Dickeya dianthicola ME23 0.50 DZA65_RS19580 erythrose-4-phosphate dehydrogenase 0.66 DZA65_RS07115 glucose-1-phosphate thymidylyltransferase RfbA low > 75
Enterobacter asburiae PDN3 0.50 EX28DRAFT_2973 erythrose-4-phosphate dehydrogenase 0.66 EX28DRAFT_0527 glucose-1-phosphate thymidylyltransferase, short form — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF3022 D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) 0.75 GFF3889 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Escherichia fergusonii Becca 0.50 EFB2_00979 D-erythrose-4-phosphate dehydrogenase 0.76 EFB2_01815 Glucose-1-phosphate thymidylyltransferase 1 low > 86
Dickeya dadantii 3937 0.50 DDA3937_RS18520 erythrose-4-phosphate dehydrogenase 0.66 DDA3937_RS06740 glucose-1-phosphate thymidylyltransferase RfbA low > 74
Serratia liquefaciens MT49 0.50 IAI46_21015 erythrose-4-phosphate dehydrogenase 0.67 IAI46_00615 glucose-1-phosphate thymidylyltransferase RfbA low > 86
Shewanella amazonensis SB2B 0.50 Sama_2758 erythrose 4-phosphate dehydrogenase (RefSeq) 0.65 Sama_2240 glucose-1-phosphate thymidylyltransferase (RefSeq) low > 62
Klebsiella michiganensis M5al 0.49 BWI76_RS23985 erythrose-4-phosphate dehydrogenase 0.65 BWI76_RS19060 glucose-1-phosphate thymidylyltransferase low > 92
Alteromonas macleodii MIT1002 0.49 MIT1002_00862 D-erythrose-4-phosphate dehydrogenase 0.71 MIT1002_03560 Glucose-1-phosphate thymidylyltransferase 1 — —
Erwinia tracheiphila SCR3 0.49 LU632_RS05535 epd erythrose-4-phosphate dehydrogenase 0.70 LU632_RS08860 rfbA glucose-1-phosphate thymidylyltransferase RfbA low > 74
Shewanella loihica PV-4 0.49 Shew_0753 erythrose 4-phosphate dehydrogenase (RefSeq) 0.68 Shew_1402 glucose-1-phosphate thymidylyltransferase (RefSeq) — —
Shewanella sp. ANA-3 0.49 Shewana3_3352 erythrose 4-phosphate dehydrogenase (RefSeq) 0.68 Shewana3_1380 glucose-1-phosphate thymidylyltransferase (RefSeq) — —
Shewanella oneidensis MR-1 0.48 SO0931 epd D-erythrose-4-phosphate dehydrogenase (NCBI ptt file) 0.64 SO3186 rfbA glucose-1-phosphate-thymidylyltransferase (NCBI ptt file) low > 76
Acinetobacter radioresistens SK82 0.38 MPMX26_01087 D-erythrose-4-phosphate dehydrogenase 0.67 MPMX26_00452 Glucose-1-phosphate thymidylyltransferase 1 low > 36

Not shown: 1 genomes with orthologs for PP_4964 only; 47 genomes with orthologs for PP_1783 only