Conservation of cofitness between PP_1326 and PP_1355 in Pseudomonas putida KT2440

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase 1.0 PP_1355 Muropeptide permease AmpG 0.56 14
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_15290 methyltransferase 0.81 AO353_16925 AmpG family muropeptide MFS transporter low > 101
Pseudomonas sp. RS175 0.84 PFR28_03597 Ribosomal RNA small subunit methyltransferase I 0.80 PFR28_00495 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_5346 rRNA small subunit methyltransferase I 0.81 Pf6N2E2_2971 AmpG permease low > 103
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_4112 Protein of unknown function UPF0011 0.80 Psyr_4078 AmpG-related permease low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_4112 Protein of unknown function UPF0011 0.80 Psyr_4078 AmpG-related permease low > 86
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_17110 methyltransferase 0.81 AO356_05555 AmpG family muropeptide MFS transporter low > 104
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_953 rRNA small subunit methyltransferase I 0.81 Pf1N1B4_3168 AmpG permease — —
Pseudomonas fluorescens SBW25 0.83 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.80 PFLU_RS24475 AmpG family muropeptide MFS transporter low > 109
Pseudomonas fluorescens SBW25-INTG 0.83 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.80 PFLU_RS24475 AmpG family muropeptide MFS transporter low > 109
Pseudomonas simiae WCS417 0.83 PS417_04590 methyltransferase 0.78 PS417_22815 permease low > 88
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_1643 rRNA small subunit methyltransferase I 0.80 PfGW456L13_4645 AmpG permease low > 87
Pseudomonas stutzeri RCH2 0.77 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.56 Psest_1144 AmpG-related permease low > 67
Pseudomonas sp. S08-1 0.76 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.64 OH686_08200 AmpG permease low > 80
Shewanella amazonensis SB2B 0.56 Sama_3353 hypothetical protein (RefSeq) 0.38 Sama_2556 AmpG protein, putative (RefSeq) low > 62
Shewanella loihica PV-4 0.55 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) 0.38 Shew_2892 major facilitator transporter (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase 0.12 CSW01_11705 MFS transporter low > 62
Marinobacter adhaerens HP15 0.54 HP15_554 tetrapyrrole methylase family protein 0.31 HP15_2363 major facilitator superfamily MFS_1 — —
Shewanella oneidensis MR-1 0.53 SO0301 hypothetical methyltransferase (NCBI ptt file) 0.40 SO3814 ampG protein, putative (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.52 Shewana3_3879 hypothetical protein (RefSeq) 0.40 Shewana3_0783 major facilitator transporter (RefSeq) low > 73
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.21 LRK55_RS08730 MFS transporter low > 63
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.21 LRK54_RS09200 MFS transporter low > 59
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.31 B158DRAFT_0920 Major Facilitator Superfamily. low > 40
Dechlorosoma suillum PS 0.46 Dsui_0251 putative S-adenosylmethionine-dependent methyltransferase, YraL family 0.15 Dsui_0739 Major Facilitator Superfamily transporter low > 51
Caulobacter crescentus NA1000 0.35 CCNA_00143 ribosomal RNA small subunit methyltransferase I 0.27 CCNA_00136 AmpG protein low > 66
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_00143 ribosomal RNA small subunit methyltransferase I 0.27 CCNA_00136 AmpG protein low > 67
Azospirillum sp. SherDot2 0.35 MPMX19_02471 Ribosomal RNA small subunit methyltransferase I 0.24 MPMX19_04371 Anhydromuropeptide permease 0.55 23
Azospirillum brasilense Sp245 0.34 AZOBR_RS02155 16S rRNA methyltransferase 0.26 AZOBR_RS09735 MFS transporter permease low > 97
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS13300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.26 A4249_RS14065 MFS transporter — —
Rhodospirillum rubrum S1H 0.26 Rru_A3693 Protein of unknown function UPF0011 (NCBI) 0.34 Rru_A0147 Major facilitator superfamily MFS_1 (NCBI) low > 58

Not shown: 58 genomes with orthologs for PP_1326 only; 1 genomes with orthologs for PP_1355 only