Conservation of cofitness between PP_4964 and PP_1353 in Pseudomonas putida KT2440

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4964 D-erythrose 4-phosphate dehydrogenase 1.0 PP_1353 conserved membrane protein of unknown function 0.38 16
Pseudomonas fluorescens SBW25 0.90 PFLU_RS28090 erythrose-4-phosphate dehydrogenase 0.83 PFLU_RS24145 mechanosensitive ion channel — —
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS28090 erythrose-4-phosphate dehydrogenase 0.83 PFLU_RS24145 mechanosensitive ion channel — —
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_13685 glyceraldehyde-3-phosphate dehydrogenase 0.83 AO356_17965 mechanosensitive ion channel protein MscS low > 104
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_2398 D-erythrose-4-phosphate dehydrogenase 0.83 Pf1N1B4_649 Small-conductance mechanosensitive channel — —
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_4656 D-erythrose-4-phosphate dehydrogenase 0.83 Pf6N2E2_5523 Small-conductance mechanosensitive channel — —
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_07950 glyceraldehyde-3-phosphate dehydrogenase 0.80 AO353_03635 mechanosensitive ion channel protein MscS — —
Pseudomonas sp. RS175 0.89 PFR28_04187 D-erythrose-4-phosphate dehydrogenase 0.88 PFR28_03424 Small-conductance mechanosensitive channel — —
Pseudomonas simiae WCS417 0.88 PS417_26435 glyceraldehyde-3-phosphate dehydrogenase 0.85 PS417_22505 mechanosensitive ion channel protein MscS — —
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_1065 D-erythrose-4-phosphate dehydrogenase 0.83 PfGW456L13_1841 Small-conductance mechanosensitive channel — —
Pseudomonas sp. S08-1 0.87 OH686_10765 erythrose-4-phosphate dehydrogenase 0.59 OH686_08205 Small-conductance mechanosensitive channel — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_4791 D-erythrose-4-phosphate dehydrogenase 0.72 Psyr_4086 MscS Mechanosensitive ion channel low > 86
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_4791 D-erythrose-4-phosphate dehydrogenase 0.72 Psyr_4086 MscS Mechanosensitive ion channel — —
Pseudomonas stutzeri RCH2 0.83 Psest_0329 erythrose-4-phosphate dehydrogenase 0.61 Psest_1143 Small-conductance mechanosensitive channel — —
Marinobacter adhaerens HP15 0.56 HP15_2912 glyceraldehyde 3-phosphate dehydrogenase, type I 0.44 HP15_3381 MscS mechanosensitive ion channel — —
Castellaniella sp019104865 MT123 0.54 ABCV34_RS03650 glyceraldehyde 3-phosphate dehydrogenase NAD-binding domain-containing protein 0.28 ABCV34_RS00345 mechanosensitive ion channel family protein low > 48
Pantoea sp. MT58 0.51 IAI47_03685 erythrose-4-phosphate dehydrogenase 0.31 IAI47_03700 small-conductance mechanosensitive channel MscS low > 76
Pectobacterium carotovorum WPP14 0.51 HER17_RS02685 erythrose-4-phosphate dehydrogenase 0.32 HER17_RS02700 small-conductance mechanosensitive channel MscS low > 75
Rahnella sp. WP5 0.51 EX31_RS21405 erythrose-4-phosphate dehydrogenase 0.33 EX31_RS21435 small-conductance mechanosensitive channel MscS low > 89
Escherichia coli ECRC102 0.51 NIAGMN_17150 epd erythrose-4-phosphate dehydrogenase 0.33 NIAGMN_17170 mscS small-conductance mechanosensitive channel MscS — —
Escherichia coli ECRC62 0.51 BNILDI_09835 epd erythrose-4-phosphate dehydrogenase 0.33 BNILDI_09850 mscS small-conductance mechanosensitive channel MscS — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_00789 D-erythrose-4-phosphate dehydrogenase 0.33 OHPLBJKB_00792 Small-conductance mechanosensitive channel low > 73
Escherichia coli ECRC101 0.51 MCAODC_09905 epd erythrose-4-phosphate dehydrogenase 0.33 MCAODC_09925 mscS small-conductance mechanosensitive channel MscS — —
Enterobacter sp. TBS_079 0.51 MPMX20_03779 D-erythrose-4-phosphate dehydrogenase 0.31 MPMX20_03776 Small-conductance mechanosensitive channel low > 85
Escherichia coli ECRC101 0.51 OKFHMN_19385 epd erythrose-4-phosphate dehydrogenase 0.33 OKFHMN_19405 mscS small-conductance mechanosensitive channel MscS — —
Escherichia coli BW25113 0.51 b2927 epd D-erythrose 4-phosphate dehydrogenase (NCBI) 0.33 b2924 mscS mechanosensitive channel (NCBI) low > 76
Escherichia coli ECRC98 0.51 JDDGAC_23015 epd erythrose-4-phosphate dehydrogenase 0.33 JDDGAC_23035 mscS small-conductance mechanosensitive channel MscS — —
Escherichia coli BL21 0.51 ECD_02758 D-erythrose 4-phosphate dehydrogenase 0.33 ECD_02755 mechanosensitive channel protein, small conductance low > 60
Escherichia coli Nissle 1917 0.51 ECOLIN_RS16265 erythrose-4-phosphate dehydrogenase 0.33 ECOLIN_RS16250 small-conductance mechanosensitive channel MscS low > 52
Escherichia coli ECRC99 0.51 KEDOAH_08755 epd erythrose-4-phosphate dehydrogenase 0.33 KEDOAH_08735 mscS small-conductance mechanosensitive channel MscS — —
Escherichia coli ECOR27 0.51 NOLOHH_11295 epd erythrose-4-phosphate dehydrogenase 0.33 NOLOHH_11315 mscS small-conductance mechanosensitive channel MscS low > 57
Escherichia coli ECOR38 0.51 HEPCGN_18695 epd erythrose-4-phosphate dehydrogenase 0.33 HEPCGN_18710 mscS small-conductance mechanosensitive channel MscS low > 85
Dickeya dianthicola 67-19 0.50 HGI48_RS18445 erythrose-4-phosphate dehydrogenase 0.31 HGI48_RS18430 small-conductance mechanosensitive channel MscS low > 71
Dickeya dianthicola ME23 0.50 DZA65_RS19580 erythrose-4-phosphate dehydrogenase 0.32 DZA65_RS19565 small-conductance mechanosensitive channel MscS low > 75
Enterobacter asburiae PDN3 0.50 EX28DRAFT_2973 erythrose-4-phosphate dehydrogenase 0.30 EX28DRAFT_2970 Small-conductance mechanosensitive channel low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF3022 D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) 0.31 GFF3019 Protein involved in stability of MscS mechanosensitive channel low > 78
Escherichia fergusonii Becca 0.50 EFB2_00979 D-erythrose-4-phosphate dehydrogenase 0.33 EFB2_00982 Small-conductance mechanosensitive channel low > 86
Serratia liquefaciens MT49 0.50 IAI46_21015 erythrose-4-phosphate dehydrogenase 0.35 IAI46_20995 small-conductance mechanosensitive channel MscS low > 86
Dickeya dadantii 3937 0.50 DDA3937_RS18520 erythrose-4-phosphate dehydrogenase 0.33 DDA3937_RS18505 small-conductance mechanosensitive channel MscS low > 74
Shewanella amazonensis SB2B 0.50 Sama_2758 erythrose 4-phosphate dehydrogenase (RefSeq) 0.39 Sama_2465 putative small-conductance mechanosensitive channel (RefSeq) — —
Klebsiella michiganensis M5al 0.49 BWI76_RS23985 erythrose-4-phosphate dehydrogenase 0.34 BWI76_RS23970 mechanosensitive ion channel protein MscS low > 92
Alteromonas macleodii MIT1002 0.49 MIT1002_00862 D-erythrose-4-phosphate dehydrogenase 0.45 MIT1002_02492 Small-conductance mechanosensitive channel — —
Erwinia tracheiphila SCR3 0.49 LU632_RS05535 epd erythrose-4-phosphate dehydrogenase 0.33 LU632_RS05550 mscS small-conductance mechanosensitive channel MscS — —
Shewanella loihica PV-4 0.49 Shew_0753 erythrose 4-phosphate dehydrogenase (RefSeq) 0.38 Shew_1152 MscS mechanosensitive ion channel (RefSeq) — —
Shewanella sp. ANA-3 0.49 Shewana3_3352 erythrose 4-phosphate dehydrogenase (RefSeq) 0.39 Shewana3_1206 MscS mechanosensitive ion channel (RefSeq) low > 73
Shewanella oneidensis MR-1 0.48 SO0931 epd D-erythrose-4-phosphate dehydrogenase (NCBI ptt file) 0.39 SO3340 hypothetical Small-conductance mechanosensitive channel (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_02530 D-erythrose-4-phosphate dehydrogenase 0.43 CSW01_02550 mechanosensitive ion channel protein low > 62

Not shown: 2 genomes with orthologs for PP_4964 only; 28 genomes with orthologs for PP_1353 only