| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4693 | | RNA polymerase-binding transcription factor DksA | 1.0 | PP_1002 | | arginine/ornithine antiporter | 0.39 | 17 |
| Pseudomonas simiae WCS417 | 0.78 | PS417_23875 | | molecular chaperone DnaK | 0.92 | PS417_22325 | | amino acid APC transporter | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.78 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | 0.87 | PfGW456L13_1875 | | Arginine/ornithine antiporter ArcD | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.77 | AO356_16095 | | molecular chaperone DnaK | 0.87 | AO356_05265 | | arginine-ornithine antiporter | low | > 104 |
| Pseudomonas fluorescens SBW25 | 0.77 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.89 | PFLU_RS23965 | | arginine-ornithine antiporter | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.77 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.89 | PFLU_RS23965 | | arginine-ornithine antiporter | low | > 109 |
| Pseudomonas sp. RS175 | 0.77 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | 0.85 | PFR28_00552 | | Arginine/ornithine antiporter | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.76 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | 0.84 | Pf1N1B4_614 | | Arginine/ornithine antiporter ArcD | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.76 | AO353_14420 | | molecular chaperone DnaK | 0.92 | AO353_03465 | | arginine-ornithine antiporter | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.76 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.82 | Psyr_2683 | | arginine:ornithine antiporter, APA family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.76 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.82 | Psyr_2683 | | arginine:ornithine antiporter, APA family | low | > 86 |
| Pseudomonas sp. S08-1 | 0.71 | OH686_17280 | | RNA polymerase-binding protein DksA | 0.70 | OH686_14345 | | arginine-ornithine antiporter | — | — |
| Pseudomonas stutzeri RCH2 | 0.69 | Psest_1003 | | RNA polymerase-binding protein DksA | 0.78 | Psest_0273 | | arginine/ornithine antiporter | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.68 | Pf6N2E2_5160 | | C4-type zinc finger protein, DksA/TraR family | 0.88 | Pf6N2E2_2907 | | Arginine/ornithine antiporter ArcD | low | > 103 |
| Serratia liquefaciens MT49 | 0.65 | IAI46_21210 | | RNA polymerase-binding protein DksA | 0.41 | IAI46_13285 | | amino acid permease | low | > 86 |
| Escherichia coli ECOR38 | 0.64 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | 0.43 | HEPCGN_06055 | ydgI | Putative arginine/ornithine antiporter | low | > 85 |
| Enterobacter sp. TBS_079 | 0.64 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | 0.41 | MPMX20_02029 | | Putative arginine/ornithine antiporter | low | > 85 |
| Escherichia coli ECRC98 | 0.64 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | 0.43 | JDDGAC_02270 | ydgI | Putative arginine/ornithine antiporter | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.64 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | 0.43 | OHPLBJKB_02121 | | Putative arginine/ornithine antiporter | low | > 73 |
| Enterobacter asburiae PDN3 | 0.64 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | 0.41 | EX28DRAFT_1546 | | transporter, basic amino acid/polyamine antiporter (APA) family | — | — |
| Escherichia coli ECRC62 | 0.64 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | 0.43 | BNILDI_16975 | ydgI | Putative arginine/ornithine antiporter | — | — |
| Escherichia coli BL21 | 0.64 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | 0.43 | ECD_01574 | | putative arginine/ornithine antiporter transporter | — | — |
| Escherichia coli BW25113 | 0.64 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | 0.43 | b1605 | ydgI | predicted arginine/ornithine antiporter transporter (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 0.64 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | 0.43 | NIAGMN_00395 | ydgI | Putative arginine/ornithine antiporter | — | — |
| Escherichia coli Nissle 1917 | 0.64 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | 0.43 | ECOLIN_RS08965 | | amino acid permease | — | — |
| Escherichia coli ECOR27 | 0.64 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | 0.43 | NOLOHH_18185 | ydgI | Putative arginine/ornithine antiporter | — | — |
| Escherichia coli ECRC101 | 0.64 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | 0.43 | MCAODC_17730 | ydgI | Putative arginine/ornithine antiporter | — | — |
| Escherichia fergusonii Becca | 0.64 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | 0.43 | EFB2_02387 | | Putative arginine/ornithine antiporter | low | > 86 |
| Escherichia coli ECRC99 | 0.64 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | 0.43 | KEDOAH_00425 | ydgI | Putative arginine/ornithine antiporter | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.64 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | 0.41 | GFF1798 | | Arginine/ornithine antiporter ArcD | low | > 78 |
| Escherichia coli ECRC101 | 0.64 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | 0.43 | OKFHMN_27680 | ydgI | Putative arginine/ornithine antiporter | — | — |
| Klebsiella michiganensis M5al | 0.64 | BWI76_RS05015 | | transcriptional regulator | 0.41 | BWI76_RS16225 | | arginine:ornithine antiporter | low | > 92 |
| Vibrio cholerae E7946 ATCC 55056 | 0.64 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 0.45 | CSW01_02275 | | arginine:ornithine antiporter | low | > 62 |
| Shewanella amazonensis SB2B | 0.63 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.10 | Sama_3335 | potE | putrescine transporter (RefSeq) | low | > 62 |
| Pantoea sp. MT58 | 0.63 | IAI47_15635 | | RNA polymerase-binding protein DksA | 0.38 | IAI47_09555 | | amino acid permease | low | > 76 |
| Shewanella sp. ANA-3 | 0.60 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.10 | Shewana3_3872 | potE | putrescine transporter (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.60 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | 0.11 | SO0313 | potE | putrescine-ornithine antiporter (NCBI ptt file) | — | — |
| Rhizobium sp. OAE497 | 0.40 | ABIE40_RS10345 | | RNA polymerase-binding protein DksA | 0.15 | ABIE40_RS23750 | | amino acid permease | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.38 | SMc00469 | | DnaK suppressor protein | 0.51 | SMa1667 | | ArcD1 arginine/ornithine antiporter | — | — |
| Caulobacter crescentus NA1000 | 0.37 | CCNA_02663 | | DnaK suppressor protein DksA | 0.12 | CCNA_03226 | | basic amino acid/polyamine antiporter (APA) family transporter | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.37 | CCNA_02663 | | DnaK suppressor protein DksA | 0.12 | CCNA_03226 | | basic amino acid/polyamine antiporter (APA) family transporter | low | > 67 |
| Azospirillum brasilense Sp245 | 0.37 | AZOBR_RS11245 | | molecular chaperone DnaK | 0.52 | AZOBR_RS13260 | | amino acid APC transporter | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.31 | Ga0059261_0274 | | transcriptional regulator, TraR/DksA family | 0.14 | Ga0059261_0539 | | Amino acid transporters | low | > 68 |
Not shown: 29 genomes with orthologs for PP_4693 only; 6 genomes with orthologs for PP_1002 only