Conservation of cofitness between PP_4098 and PP_0852 in Pseudomonas putida KT2440

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4098 UvrABC system protein C 1.0 PP_0852 Transcriptional regulator, Cro/CI family 0.24 14
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_00350 excinuclease ABC subunit C 0.58 AO356_06595 Cro/Cl family transcriptional regulator — —
Pseudomonas simiae WCS417 0.87 PS417_10725 excinuclease ABC subunit C 0.59 PS417_23150 Cro/Cl family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS10770 excinuclease ABC subunit UvrC 0.59 PFLU_RS24805 helix-turn-helix domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.87 PFLU_RS10770 excinuclease ABC subunit UvrC 0.59 PFLU_RS24805 helix-turn-helix domain-containing protein low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_2896 Excinuclease ABC subunit C 0.54 Psyr_1247 conserved hypothetical protein low > 86
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_2896 Excinuclease ABC subunit C 0.54 Psyr_1247 conserved hypothetical protein low > 86
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_2886 Excinuclease ABC subunit C 0.41 PfGW456L13_4863 FIG021952: putative membrane protein low > 87
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_5618 Excinuclease ABC subunit C 0.58 Pf1N1B4_855 FIG021952: putative membrane protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_21835 excinuclease ABC subunit C 0.60 AO353_15885 Cro/Cl family transcriptional regulator low > 101
Pseudomonas sp. RS175 0.84 PFR28_01411 UvrABC system protein C 0.59 PFR28_00296 Cytoskeleton protein RodZ low > 88
Pseudomonas stutzeri RCH2 0.84 Psest_2259 excinuclease ABC, C subunit 0.41 Psest_1261 Uncharacterized protein conserved in bacteria low > 67
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_2021 Excinuclease ABC subunit C 0.40 Pf6N2E2_3179 FIG021952: putative membrane protein low > 103
Pseudomonas sp. S08-1 0.82 OH686_00340 excinuclease ABC subunit C 0.47 OH686_17525 Cytoskeleton protein RodZ low > 80
Escherichia coli BL21 0.52 ECD_01878 excinuclease UvrABC, endonuclease subunit 0.18 ECD_02408 MreB assembly cytoskeletal protein low > 60
Escherichia coli Nissle 1917 0.52 ECOLIN_RS10895 excinuclease ABC subunit UvrC 0.19 ECOLIN_RS14295 cytoskeleton protein RodZ low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_01816 UvrABC system protein C 0.18 OHPLBJKB_01193 Cytoskeleton protein RodZ 0.55 41
Escherichia coli BW25113 0.52 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.18 b2516 yfgA hypothetical protein (NCBI) low > 76
Escherichia fergusonii Becca 0.52 EFB2_02033 UvrABC system protein C 0.19 EFB2_01374 Cytoskeleton protein RodZ low > 86
Escherichia coli ECRC101 0.52 MCAODC_19565 uvrC excinuclease ABC subunit UvrC 0.19 MCAODC_12245 rodZ cytoskeleton protein RodZ — —
Escherichia coli ECRC62 0.52 BNILDI_15235 uvrC excinuclease ABC subunit UvrC 0.18 BNILDI_12165 rodZ cytoskeleton protein RodZ — —
Escherichia coli ECOR38 0.52 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC 0.19 HEPCGN_20835 rodZ cytoskeleton protein RodZ low > 85
Escherichia coli ECRC99 0.52 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC 0.19 KEDOAH_06505 rodZ cytoskeleton protein RodZ — —
Escherichia coli ECRC101 0.52 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC 0.19 OKFHMN_21715 rodZ cytoskeleton protein RodZ — —
Klebsiella michiganensis M5al 0.52 BWI76_RS18330 excinuclease ABC subunit C 0.19 BWI76_RS21090 cytoskeletal protein RodZ low > 92
Escherichia coli ECRC102 0.52 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC 0.19 NIAGMN_19485 rodZ cytoskeleton protein RodZ — —
Escherichia coli ECRC98 0.52 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC 0.19 JDDGAC_25390 rodZ cytoskeleton protein RodZ — —
Escherichia coli ECOR27 0.52 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC 0.19 NOLOHH_13365 rodZ cytoskeleton protein RodZ — —
Serratia liquefaciens MT49 0.52 IAI46_09210 excinuclease ABC subunit UvrC 0.18 IAI46_19280 cytoskeleton protein RodZ low > 86
Erwinia tracheiphila SCR3 0.51 LU632_RS10195 uvrC excinuclease ABC subunit UvrC 0.19 LU632_RS17805 rodZ cytoskeleton protein RodZ low > 74
Pantoea sp. MT58 0.51 IAI47_12465 excinuclease ABC subunit UvrC 0.18 IAI47_05050 cytoskeleton protein RodZ low > 76
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_06140 excinuclease ABC subunit C 0.19 CSW01_03935 cytoskeleton protein RodZ low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF1700 Excinuclease ABC subunit C 0.18 GFF2413 FIG021952: putative membrane protein low > 78
Shewanella oneidensis MR-1 0.51 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) 0.14 SO3313 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.51 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) 0.16 Shewana3_1228 hypothetical protein (RefSeq) low > 73
Dickeya dianthicola ME23 0.51 DZA65_RS14285 excinuclease ABC subunit UvrC 0.15 DZA65_RS16655 cytoskeleton protein RodZ low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS13795 excinuclease ABC subunit UvrC 0.15 HGI48_RS15580 cytoskeleton protein RodZ low > 71
Dickeya dadantii 3937 0.51 DDA3937_RS13700 excinuclease ABC subunit UvrC 0.15 DDA3937_RS15470 cytoskeleton protein RodZ low > 74
Shewanella amazonensis SB2B 0.51 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) 0.14 Sama_2366 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.51 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.15 Shew_1289 hypothetical protein (RefSeq) low > 60
Enterobacter asburiae PDN3 0.51 EX28DRAFT_0634 Excinuclease ABC subunit C 0.18 EX28DRAFT_0127 Uncharacterized protein conserved in bacteria 0.71 24
Pectobacterium carotovorum WPP14 0.51 HER17_RS07715 excinuclease ABC subunit UvrC 0.15 HER17_RS06095 cytoskeleton protein RodZ low > 75
Enterobacter sp. TBS_079 0.51 MPMX20_02838 UvrABC system protein C 0.17 MPMX20_03394 Cytoskeleton protein RodZ low > 85
Rahnella sp. WP5 0.51 EX31_RS24150 excinuclease ABC subunit UvrC 0.16 EX31_RS20515 cytoskeleton protein RodZ low > 89
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_1273 Excinuclease ABC subunit C 0.16 B158DRAFT_1151 Uncharacterized protein conserved in bacteria low > 40
Alteromonas macleodii MIT1002 0.49 MIT1002_02153 Excinuclease ABC subunit C 0.16 MIT1002_02789 Cytoskeleton protein RodZ low > 70
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS14000 excinuclease ABC subunit C 0.12 RR42_RS13145 DNA-binding protein low > 128
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS10245 excinuclease ABC subunit UvrC 0.11 ABZR87_RS10910 RodZ family helix-turn-helix domain-containing protein low > 80

Not shown: 48 genomes with orthologs for PP_4098 only; 3 genomes with orthologs for PP_0852 only