Conservation of cofitness between PP_4964 and PP_0719 in Pseudomonas putida KT2440

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4964 D-erythrose 4-phosphate dehydrogenase 1.0 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.42 8
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS28090 erythrose-4-phosphate dehydrogenase 0.92 PFLU_RS03610 redox-regulated ATPase YchF — —
Pseudomonas fluorescens SBW25 0.90 PFLU_RS28090 erythrose-4-phosphate dehydrogenase 0.92 PFLU_RS03610 redox-regulated ATPase YchF — —
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_13685 glyceraldehyde-3-phosphate dehydrogenase 0.94 AO356_16450 GTP-binding protein low > 104
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_2398 D-erythrose-4-phosphate dehydrogenase 0.94 Pf1N1B4_2912 GTP-binding and nucleic acid-binding protein YchF — —
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_07950 glyceraldehyde-3-phosphate dehydrogenase 0.93 AO353_14740 GTP-binding protein — —
Pseudomonas sp. RS175 0.89 PFR28_04187 D-erythrose-4-phosphate dehydrogenase 0.95 PFR28_03664 Ribosome-binding ATPase YchF — —
Pseudomonas simiae WCS417 0.88 PS417_26435 glyceraldehyde-3-phosphate dehydrogenase 0.93 PS417_03560 GTP-binding protein — —
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_1065 D-erythrose-4-phosphate dehydrogenase 0.94 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF — —
Pseudomonas sp. S08-1 0.87 OH686_10765 erythrose-4-phosphate dehydrogenase 0.94 OH686_07965 GTP-binding and nucleic acid-binding protein YchF — —
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_4791 D-erythrose-4-phosphate dehydrogenase 0.94 Psyr_0941 Conserved hypothetical protein 92 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_4791 D-erythrose-4-phosphate dehydrogenase 0.94 Psyr_0941 Conserved hypothetical protein 92 low > 86
Pseudomonas stutzeri RCH2 0.83 Psest_0329 erythrose-4-phosphate dehydrogenase 0.91 Psest_1103 GTP-binding protein YchF — —
Dechlorosoma suillum PS 0.59 Dsui_1558 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 0.65 Dsui_1039 GTP-binding protein YchF — —
Marinobacter adhaerens HP15 0.56 HP15_2912 glyceraldehyde 3-phosphate dehydrogenase, type I 0.78 HP15_704 translation-associated GTPase — —
Castellaniella sp019104865 MT123 0.54 ABCV34_RS03650 glyceraldehyde 3-phosphate dehydrogenase NAD-binding domain-containing protein 0.66 ABCV34_RS09215 redox-regulated ATPase YchF — —
Pantoea sp. MT58 0.51 IAI47_03685 erythrose-4-phosphate dehydrogenase 0.73 IAI47_11310 redox-regulated ATPase YchF low > 76
Pectobacterium carotovorum WPP14 0.51 HER17_RS02685 erythrose-4-phosphate dehydrogenase 0.72 HER17_RS10445 redox-regulated ATPase YchF low > 75
Rahnella sp. WP5 0.51 EX31_RS21405 erythrose-4-phosphate dehydrogenase 0.70 EX31_RS07380 redox-regulated ATPase YchF low > 89
Escherichia coli BW25113 0.51 b2927 epd D-erythrose 4-phosphate dehydrogenase (NCBI) 0.72 b1203 ychF translation-associated GTPase (NCBI) — —
Escherichia coli ECRC101 0.51 MCAODC_09905 epd erythrose-4-phosphate dehydrogenase 0.72 MCAODC_21850 ychF redox-regulated ATPase YchF — —
Enterobacter sp. TBS_079 0.51 MPMX20_03779 D-erythrose-4-phosphate dehydrogenase 0.70 MPMX20_02645 Ribosome-binding ATPase YchF low > 85
Escherichia coli ECRC102 0.51 NIAGMN_17150 epd erythrose-4-phosphate dehydrogenase 0.72 NIAGMN_27825 ychF redox-regulated ATPase YchF — —
Escherichia coli ECOR38 0.51 HEPCGN_18695 epd erythrose-4-phosphate dehydrogenase 0.72 HEPCGN_24875 ychF redox-regulated ATPase YchF — —
Escherichia coli BL21 0.51 ECD_02758 D-erythrose 4-phosphate dehydrogenase 0.72 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated — —
Escherichia coli ECRC101 0.51 OKFHMN_19385 epd erythrose-4-phosphate dehydrogenase 0.72 OKFHMN_28410 ychF redox-regulated ATPase YchF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_00789 D-erythrose-4-phosphate dehydrogenase 0.72 OHPLBJKB_02484 Ribosome-binding ATPase YchF low > 73
Escherichia coli ECRC62 0.51 BNILDI_09835 epd erythrose-4-phosphate dehydrogenase 0.72 BNILDI_18805 ychF redox-regulated ATPase YchF — —
Escherichia coli ECOR27 0.51 NOLOHH_11295 epd erythrose-4-phosphate dehydrogenase 0.72 NOLOHH_20650 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC98 0.51 JDDGAC_23015 epd erythrose-4-phosphate dehydrogenase 0.72 JDDGAC_06165 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC99 0.51 KEDOAH_08755 epd erythrose-4-phosphate dehydrogenase 0.72 KEDOAH_25405 ychF redox-regulated ATPase YchF — —
Escherichia coli Nissle 1917 0.51 ECOLIN_RS16265 erythrose-4-phosphate dehydrogenase 0.72 ECOLIN_RS07280 redox-regulated ATPase YchF — —
Dickeya dianthicola ME23 0.50 DZA65_RS19580 erythrose-4-phosphate dehydrogenase 0.72 DZA65_RS11435 redox-regulated ATPase YchF low > 75
Dickeya dianthicola 67-19 0.50 HGI48_RS18445 erythrose-4-phosphate dehydrogenase 0.72 HGI48_RS10975 redox-regulated ATPase YchF low > 71
Enterobacter asburiae PDN3 0.50 EX28DRAFT_2973 erythrose-4-phosphate dehydrogenase 0.70 EX28DRAFT_0821 GTP-binding protein YchF — —
Escherichia fergusonii Becca 0.50 EFB2_00979 D-erythrose-4-phosphate dehydrogenase 0.72 EFB2_02724 Ribosome-binding ATPase YchF low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF3022 D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) 0.73 GFF2784 GTP-binding and nucleic acid-binding protein YchF low > 78
Serratia liquefaciens MT49 0.50 IAI46_21015 erythrose-4-phosphate dehydrogenase 0.70 IAI46_10240 redox-regulated ATPase YchF — —
Dickeya dadantii 3937 0.50 DDA3937_RS18520 erythrose-4-phosphate dehydrogenase 0.72 DDA3937_RS11035 redox-regulated ATPase YchF low > 74
Shewanella amazonensis SB2B 0.50 Sama_2758 erythrose 4-phosphate dehydrogenase (RefSeq) 0.72 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) low > 62
Klebsiella michiganensis M5al 0.49 BWI76_RS23985 erythrose-4-phosphate dehydrogenase 0.70 BWI76_RS17485 GTP-binding protein YchF — —
Alteromonas macleodii MIT1002 0.49 MIT1002_00862 D-erythrose-4-phosphate dehydrogenase 0.71 MIT1002_01504 Ribosome-binding ATPase YchF — —
Erwinia tracheiphila SCR3 0.49 LU632_RS05535 epd erythrose-4-phosphate dehydrogenase 0.74 LU632_RS13950 ychF redox-regulated ATPase YchF low > 74
Shewanella loihica PV-4 0.49 Shew_0753 erythrose 4-phosphate dehydrogenase (RefSeq) 0.71 Shew_2919 translation-associated GTPase (RefSeq) — —
Shewanella sp. ANA-3 0.49 Shewana3_3352 erythrose 4-phosphate dehydrogenase (RefSeq) 0.73 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) low > 73
Shewanella oneidensis MR-1 0.48 SO0931 epd D-erythrose-4-phosphate dehydrogenase (NCBI ptt file) 0.73 SO1185 conserved hypothetical protein TIGR00092 (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_02530 D-erythrose-4-phosphate dehydrogenase 0.69 CSW01_10875 redox-regulated ATPase YchF low > 62
Acinetobacter radioresistens SK82 0.38 MPMX26_01087 D-erythrose-4-phosphate dehydrogenase 0.77 MPMX26_01861 Ribosome-binding ATPase YchF low > 36

Not shown: 1 genomes with orthologs for PP_4964 only; 55 genomes with orthologs for PP_0719 only