Conservation of cofitness between PP_5348 and PP_0362 in Pseudomonas putida KT2440

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5348 Transcriptional regulator, LysR family 1.0 PP_0362 Biotin synthase 0.72 3
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_10035 LysR family transcriptional regulator 0.94 AO353_07525 biotin synthase 0.75 16
Pseudomonas sp. RS175 0.86 PFR28_04519 HTH-type transcriptional activator CmpR 0.94 PFR28_04103 Biotin synthase 0.34 7
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_12015 LysR family transcriptional regulator 0.94 AO356_14135 biotin synthase 0.56 50
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2009 LysR family transcriptional regulator PA5437 0.94 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) 0.53 65
Pseudomonas fluorescens SBW25 0.84 PFLU_RS29885 LysR family transcriptional regulator 0.93 PFLU_RS27650 biotin synthase BioB 0.59 49
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS29885 LysR family transcriptional regulator 0.93 PFLU_RS27650 biotin synthase BioB 0.59 5
Pseudomonas simiae WCS417 0.84 PS417_28220 LysR family transcriptional regulator 0.93 PS417_26005 biotin synthase 0.36 69
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_727 LysR family transcriptional regulator PA5437 0.93 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) 0.64 34
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_4277 LysR family transcriptional regulator PA5437 0.94 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) 0.55 39
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_5062 transcriptional regulator, LysR family 0.94 Psyr_4687 biotin synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_5062 transcriptional regulator, LysR family 0.94 Psyr_4687 biotin synthase low > 86
Pseudomonas stutzeri RCH2 0.74 Psest_4086 Transcriptional regulator 0.92 Psest_0411 biotin synthetase 0.65 9
Pseudomonas sp. S08-1 0.71 OH686_13195 Transcriptional regulator, LysR family 0.93 OH686_10355 biotin synthase low > 80
Synechococcus elongatus PCC 7942 0.38 Synpcc7942_1310 cmpR ndhF3 operon transcriptional regulator 0.51 Synpcc7942_0419 bioB biotin synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_03013 transcriptional regulator, LysR family 0.58 H281DRAFT_02097 biotin synthase low > 103
Paraburkholderia graminis OAS925 0.34 ABIE53_005077 DNA-binding transcriptional LysR family regulator 0.58 ABIE53_000577 biotin synthase low > 113
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS29890 LysR family transcriptional regulator 0.58 BPHYT_RS02150 biotin synthase low > 109
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS20425 LysR family transcriptional regulator 0.59 QEN71_RS01085 biotin synthase BioB — —
Shewanella loihica PV-4 0.33 Shew_1245 LysR family transcriptional regulator (RefSeq) 0.64 Shew_1719 biotin synthase (RefSeq) — —
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS31340 transcriptional regulator 0.58 RR42_RS00940 biotin synthase low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF2192 Cys regulon transcriptional activator CysB 0.56 GFF3992 Biotin synthase (EC 2.8.1.6) low > 90
Acidovorax sp. GW101-3H11 0.31 Ac3H11_3174 RuBisCO operon transcriptional regulator 0.53 Ac3H11_2272 Biotin synthase (EC 2.8.1.6) low > 79
Variovorax sp. OAS795 0.31 ABID97_RS24450 LysR family transcriptional regulator 0.53 ABID97_RS13955 biotin synthase BioB low > 91
Dechlorosoma suillum PS 0.30 Dsui_2869 transcriptional regulator 0.53 Dsui_1297 biotin synthetase low > 51
Rhodopseudomonas palustris CGA009 0.25 TX73_007990 LysR family transcriptional regulator 0.55 TX73_010535 biotin synthase BioB — —
Shewanella amazonensis SB2B 0.24 Sama_0693 RuBisCo operon transcriptional regulator (RefSeq) 0.65 Sama_1438 biotin synthase (RefSeq) — —
Shewanella oneidensis MR-1 0.23 SO3757 rbcR rubisco operon transcriptional regulator (NCBI ptt file) 0.65 SO2740 bioB biotin synthase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.22 Shewana3_0835 LysR family transcriptional regulator (RefSeq) 0.65 Shewana3_2519 biotin synthase (RefSeq) low > 73

Not shown: 3 genomes with orthologs for PP_5348 only; 63 genomes with orthologs for PP_0362 only