Conservation of cofitness between PP_0119 and PP_0117 in Pseudomonas putida KT2440

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0119 putative zinc uptake regulation protein ZUR 1.0 PP_0117 Zn(2+) ABC transporter - permease subunit 0.44 3
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_11485 Fur family transcriptional regulator 0.77 AO356_11495 hypothetical protein
Pseudomonas sp. RS175 0.87 PFR28_04620 Zinc uptake regulation protein 0.80 PFR28_04618 High-affinity zinc uptake system membrane protein ZnuB low > 88
Pseudomonas fluorescens SBW25 0.86 PFLU_RS00375 transcriptional repressor 0.80 PFLU_RS00365 zinc ABC transporter permease subunit ZnuB low > 109
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS00375 transcriptional repressor 0.80 PFLU_RS00365 zinc ABC transporter permease subunit ZnuB
Pseudomonas simiae WCS417 0.85 PS417_00385 Fur family transcriptional regulator 0.81 PS417_00375 membrane protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_10910 Fur family transcriptional regulator 0.83 AO353_10900 hypothetical protein
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_0276 zinc uptake regulation protein, putative 0.87 Psyr_0278 ABC-3 low > 86
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_0276 zinc uptake regulation protein, putative 0.87 Psyr_0278 ABC-3 low > 86
Pseudomonas fluorescens FW300-N2E2 0.79 Pf6N2E2_4166 Zinc uptake regulation protein ZUR 0.77 Pf6N2E2_4168 Zinc ABC transporter, inner membrane permease protein ZnuB
Pseudomonas stutzeri RCH2 0.79 Psest_4308 Fe2+/Zn2+ uptake regulation proteins 0.77 Psest_4310 ABC-type Mn2+/Zn2+ transport systems, permease components
Pseudomonas fluorescens GW456-L13 0.77 PfGW456L13_598 Zinc uptake regulation protein ZUR 0.86 PfGW456L13_600 Zinc ABC transporter, inner membrane permease protein ZnuB low > 87
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_1871 Zinc uptake regulation protein ZUR 0.78 Pf1N1B4_1869 Zinc ABC transporter, inner membrane permease protein ZnuB 0.28 49
Pseudomonas sp. S08-1 0.73 OH686_12240 Zinc uptake regulation protein Zur 0.66 OH686_12250 Zinc ABC transporter, permease protein ZnuB low > 80
Marinobacter adhaerens HP15 0.58 HP15_3521 zinc uptake regulation protein 0.59 HP15_3523 zinc ABC transporter, permease protein
Azospirillum sp. SherDot2 0.55 MPMX19_01585 Zinc uptake regulation protein 0.54 MPMX19_05517 High-affinity zinc uptake system membrane protein ZnuB low > 112
Azospirillum brasilense Sp245 0.54 AZOBR_RS09280 Fur family transcriptional regulator 0.48 AZOBR_RS01595 zinc transporter low > 97
Magnetospirillum magneticum AMB-1 0.53 AMB_RS11670 transcriptional repressor 0.48 AMB_RS11680 zinc transporter
Acinetobacter radioresistens SK82 0.44 MPMX26_00095 Zinc uptake regulation protein 0.26 MPMX26_00093 High-affinity zinc uptake system membrane protein ZnuB 0.73 15
Phaeobacter inhibens DSM 17395 0.43 PGA1_262p02230 zinc uptake regulation protein zur-like protein 0.36 PGA1_262p02250 high-affinity zinc uptake system membrane protein ZnuB
Rhodospirillum rubrum S1H 0.42 Rru_A1911 Ferric uptake regulator (FUR) family (NCBI) 0.16 Rru_A2892 ABC-3 transporter component (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.38 TX73_002680 Fur family transcriptional regulator 0.20 TX73_004430 metal ABC transporter permease low > 86
Dinoroseobacter shibae DFL-12 0.37 Dshi_1703 putative ferric uptake regulator, Fur family (RefSeq) 0.41 Dshi_1701 ABC-3 protein (RefSeq) low > 64
Dickeya dadantii 3937 0.33 DDA3937_RS02765 zinc uptake transcriptional repressor Zur 0.50 DDA3937_RS10090 zinc ABC transporter permease subunit ZnuB low > 74
Pectobacterium carotovorum WPP14 0.33 HER17_RS18780 zinc uptake transcriptional repressor Zur 0.49 HER17_RS11815 zinc ABC transporter permease subunit ZnuB low > 75
Dickeya dianthicola ME23 0.32 DZA65_RS02895 zinc uptake transcriptional repressor Zur 0.52 DZA65_RS10535 zinc ABC transporter permease subunit ZnuB low > 75
Dickeya dianthicola 67-19 0.32 HGI48_RS02740 zinc uptake transcriptional repressor Zur 0.52 HGI48_RS10120 zinc ABC transporter permease subunit ZnuB low > 71
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_01980 transcriptional regulator Zur 0.51 CSW01_10410 zinc ABC transporter permease low > 62
Serratia liquefaciens MT49 0.31 IAI46_22990 zinc uptake transcriptional repressor Zur 0.52 IAI46_14615 zinc ABC transporter permease subunit ZnuB low > 86
Rahnella sp. WP5 0.30 EX31_RS11860 zinc uptake transcriptional repressor Zur 0.53 EX31_RS10685 zinc ABC transporter permease subunit ZnuB low > 89
Enterobacter asburiae PDN3 0.29 EX28DRAFT_4266 Fe2+/Zn2+ uptake regulation proteins 0.54 EX28DRAFT_0697 ABC-type Mn2+/Zn2+ transport systems, permease components low > 76
Erwinia tracheiphila SCR3 0.29 LU632_RS22295 zur zinc uptake transcriptional repressor Zur 0.53 LU632_RS13405 znuB zinc ABC transporter permease subunit ZnuB
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF1416 Zinc uptake regulation protein ZUR 0.55 GFF1638 Zinc ABC transporter, inner membrane permease protein ZnuB 0.38 20
Escherichia coli ECRC98 0.28 JDDGAC_16675 zur zinc uptake transcriptional repressor Zur 0.54 JDDGAC_00870 znuB zinc ABC transporter permease subunit ZnuB
Escherichia coli ECRC101 0.28 MCAODC_03550 zur zinc uptake transcriptional repressor Zur 0.54 MCAODC_19110 znuB zinc ABC transporter permease subunit ZnuB
Enterobacter sp. TBS_079 0.28 MPMX20_00262 Zinc uptake regulation protein 0.56 MPMX20_02765 High-affinity zinc uptake system membrane protein ZnuB 0.25 49
Escherichia coli ECRC102 0.28 NIAGMN_10800 zur zinc uptake transcriptional repressor Zur 0.54 NIAGMN_01765 znuB zinc ABC transporter permease subunit ZnuB
Escherichia coli ECRC99 0.28 KEDOAH_15110 zur zinc uptake transcriptional repressor Zur 0.54 KEDOAH_01810 znuB zinc ABC transporter permease subunit ZnuB
Escherichia coli ECRC101 0.28 OKFHMN_13050 zur zinc uptake transcriptional repressor Zur 0.54 OKFHMN_26295 znuB zinc ABC transporter permease subunit ZnuB
Castellaniella sp019104865 MT123 0.28 ABCV34_RS13430 Fur family transcriptional regulator 0.16 ABCV34_RS13445 metal ABC transporter permease low > 48
Klebsiella michiganensis M5al 0.28 BWI76_RS01890 transcriptional regulator Zur 0.55 BWI76_RS18140 zinc ABC transporter permease low > 92
Escherichia coli ECOR38 0.28 HEPCGN_11570 zur zinc uptake transcriptional repressor Zur 0.55 HEPCGN_04700 znuB zinc ABC transporter permease subunit ZnuB low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_03997 Zinc uptake regulation protein 0.54 OHPLBJKB_01869 High-affinity zinc uptake system membrane protein ZnuB low > 73
Escherichia coli ECRC62 0.28 BNILDI_06315 zur zinc uptake transcriptional repressor Zur 0.55 BNILDI_15525 znuB zinc ABC transporter permease subunit ZnuB
Escherichia coli BL21 0.28 ECD_03918 transcriptional repressor, Zn(II)-binding 0.55 ECD_01830 zinc ABC transporter permease low > 60
Escherichia coli BW25113 0.28 b4046 yjbK putative regulator (VIMSS) 0.54 b1859 znuB high-affinity zinc transporter membrane component (NCBI) low > 76
Escherichia coli ECOR27 0.28 NOLOHH_05205 zur zinc uptake transcriptional repressor Zur 0.55 NOLOHH_16735 znuB zinc ABC transporter permease subunit ZnuB
Escherichia coli Nissle 1917 0.27 ECOLIN_RS23350 zinc uptake transcriptional repressor Zur 0.55 ECOLIN_RS10355 zinc ABC transporter permease subunit ZnuB
Escherichia fergusonii Becca 0.27 EFB2_04557 Zinc uptake regulation protein 0.55 EFB2_02083 High-affinity zinc uptake system membrane protein ZnuB low > 86

Not shown: 15 genomes with orthologs for PP_0119 only; 14 genomes with orthologs for PP_0117 only