Conservation of cofitness between PFLU_RS07240 and PFLU_RS29150 in Pseudomonas fluorescens SBW25

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 1.0 PFLU_RS29150 threonine transporter RhtB 0.72 1
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 1.00 PFLU_RS29150 threonine transporter RhtB low > 109
Pseudomonas simiae WCS417 0.92 PS417_07130 RNA polymerase sigma-H factor AlgU 0.99 PS417_27470 threonine transporter RhtB low > 88
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_17635 RNA polymerase subunit sigma 0.85 AO353_08940 threonine transporter RhtB low > 101
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_3325 Sigma factor RpoE negative regulatory protein RseB precursor 0.79 Pf1N1B4_2196 Homoserine/homoserine lactone efflux protein low > 87
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_4514 Sigma factor RpoE negative regulatory protein RseB precursor 0.80 PfGW456L13_867 Homoserine/homoserine lactone efflux protein low > 87
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_04565 RNA polymerase subunit sigma 0.77 AO356_12840 threonine transporter RhtB low > 104
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_2754 Sigma factor RpoE negative regulatory protein RseB precursor 0.77 Pf6N2E2_4441 Homoserine/homoserine lactone efflux protein low > 103
Pseudomonas sp. RS175 0.70 PFR28_00692 Sigma factor AlgU regulatory protein MucB 0.79 PFR28_04355 Homoserine/homoserine lactone efflux protein low > 88
Pseudomonas putida KT2440 0.61 PP_1429 Sigma factor AlgU regulatory protein MucB 0.77 PP_0198 putative transporter low > 96
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.76 Psyr_0050 Lysine exporter protein (LYSE/YGGA) low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.76 Psyr_0050 Lysine exporter protein (LYSE/YGGA) low > 86
Pseudomonas stutzeri RCH2 0.51 Psest_3098 Negative regulator of sigma E activity 0.63 Psest_3737 Putative threonine efflux protein — —
Pseudomonas sp. S08-1 0.51 OH686_20055 Sigma factor RpoE negative regulatory protein RseB precursor 0.78 OH686_13960 Homoserine/homoserine lactone efflux protein — —
Marinobacter adhaerens HP15 0.22 HP15_777 sigma E regulatory protein, MucB/RseB 0.43 HP15_3020 lysine exporter protein (LYSE/YGGA) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.17 GFF3341 Sigma factor RpoE negative regulatory protein RseB precursor 0.37 GFF1708 Homoserine/homoserine lactone efflux protein low > 90
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_12475 sigma-E factor regulatory protein RseB 0.39 CSW01_00690 homoserine/homoserine lactone efflux protein — —
Paraburkholderia sabiae LMG 24235 0.16 QEN71_RS04585 MucB/RseB C-terminal domain-containing protein 0.26 QEN71_RS29630 LysE family translocator low > 153
Cupriavidus basilensis FW507-4G11 0.15 RR42_RS14070 sugar dehydratase 0.38 RR42_RS01735 lysine transporter LysE low > 128
Pantoea sp. MT58 0.15 IAI47_04860 sigma-E factor regulatory protein RseB 0.34 IAI47_18345 homoserine/homoserine lactone efflux protein low > 76
Herbaspirillum seropedicae SmR1 0.14 HSERO_RS09635 transcriptional regulator 0.38 HSERO_RS09360 lysine transporter LysE low > 78
Dickeya dianthicola 67-19 0.14 HGI48_RS15840 sigma-E factor regulatory protein RseB 0.37 HGI48_RS19990 homoserine/homoserine lactone efflux protein low > 71
Dickeya dianthicola ME23 0.14 DZA65_RS16920 sigma-E factor regulatory protein RseB 0.42 DZA65_RS21035 homoserine/homoserine lactone efflux protein low > 75
Dickeya dadantii 3937 0.14 DDA3937_RS15755 sigma-E factor regulatory protein RseB 0.36 DDA3937_RS19835 homoserine/homoserine lactone efflux protein low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.14 GFF2109 Sigma factor RpoE negative regulatory protein RseB precursor 0.38 GFF250 Homoserine/homoserine lactone efflux protein low > 78
Acidovorax sp. GW101-3H11 0.13 Ac3H11_1571 Sigma factor RpoE negative regulatory protein RseB precursor 0.31 Ac3H11_3901 Homoserine/homoserine lactone efflux protein — —
Klebsiella michiganensis M5al 0.13 BWI76_RS21345 sigma-E factor regulatory protein RseB 0.40 BWI76_RS01255 homoserine/homoserine lactone efflux protein low > 92
Enterobacter sp. TBS_079 0.13 MPMX20_03442 Sigma-E factor regulatory protein RseB 0.40 MPMX20_04456 Homoserine/homoserine lactone efflux protein low > 85
Enterobacter asburiae PDN3 0.13 EX28DRAFT_0074 sigma E regulatory protein, MucB/RseB 0.39 EX28DRAFT_4489 The Resistance to Homoserine/Threonine (RhtB) Family protein low > 76
Rahnella sp. WP5 0.13 EX31_RS21810 sigma-E factor regulatory protein RseB 0.35 EX31_RS15220 homoserine/homoserine lactone efflux protein low > 89
Escherichia coli ECRC100 0.13 OKFHMN_21385 rseB sigma-E factor regulatory protein RseB 0.40 OKFHMN_14350 rhtB homoserine/homoserine lactone efflux protein low > 80
Escherichia coli ECRC101 0.13 MCAODC_11915 rseB sigma-E factor regulatory protein RseB 0.40 MCAODC_04855 rhtB homoserine/homoserine lactone efflux protein low > 87
Escherichia coli ECRC98 0.13 JDDGAC_25050 rseB sigma-E factor regulatory protein RseB 0.40 JDDGAC_17975 rhtB homoserine/homoserine lactone efflux protein low > 86
Escherichia coli ECRC62 0.13 BNILDI_11860 rseB sigma-E factor regulatory protein RseB 0.40 BNILDI_05050 rhtB homoserine/homoserine lactone efflux protein low > 75
Escherichia coli ECOR38 0.13 HEPCGN_20530 rseB sigma-E factor regulatory protein RseB 0.40 HEPCGN_13050 rhtB homoserine/homoserine lactone efflux protein low > 87
Escherichia coli BL21 0.13 ECD_02465 anti-sigma E factor, binds RseA 0.40 ECD_03703 homoserine, homoserine lactone and S-methyl-methionine efflux pump low > 61
Escherichia coli BW25113 0.13 b2571 rseB periplasmic negative regulator of sigmaE (NCBI) 0.40 b3824 rhtB neutral amino-acid efflux system (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.13 OHPLBJKB_01136 Sigma-E factor regulatory protein RseB 0.40 OHPLBJKB_04227 Homoserine/homoserine lactone efflux protein low > 73
Escherichia coli ECRC102 0.13 NIAGMN_19155 rseB sigma-E factor regulatory protein RseB 0.40 NIAGMN_12105 rhtB homoserine/homoserine lactone efflux protein — —
Escherichia fergusonii Becca 0.13 EFB2_01325 Sigma-E factor regulatory protein RseB 0.40 EFB2_04813 Homoserine/homoserine lactone efflux protein low > 86
Escherichia coli ECRC99 0.13 KEDOAH_06835 rseB sigma-E factor regulatory protein RseB 0.40 KEDOAH_13800 rhtB homoserine/homoserine lactone efflux protein — —
Escherichia coli Nissle 1917 0.13 ECOLIN_RS14550 sigma-E factor regulatory protein RseB 0.40 ECOLIN_RS21945 homoserine/homoserine lactone efflux protein low > 55
Escherichia coli ECOR27 0.13 NOLOHH_13060 rseB sigma-E factor regulatory protein RseB 0.40 NOLOHH_06480 rhtB homoserine/homoserine lactone efflux protein low > 75
Erwinia tracheiphila SCR3 0.13 LU632_RS15415 rseB sigma-E factor regulatory protein RseB 0.42 LU632_RS24085 rhtB homoserine/homoserine lactone efflux protein low > 74
Ralstonia solanacearum PSI07 0.13 RPSI07_RS19005 sugar dehydratase 0.42 RPSI07_RS22500 lysine transporter LysE low > 81
Pectobacterium carotovorum WPP14 0.13 HER17_RS05790 sigma-E factor regulatory protein RseB 0.38 HER17_RS01405 homoserine/homoserine lactone efflux protein low > 75
Ralstonia sp. UNC404CL21Col 0.13 ABZR87_RS10175 MucB/RseB C-terminal domain-containing protein 0.40 ABZR87_RS06660 LysE family transporter low > 80
Variovorax sp. OAS795 0.12 ABID97_RS08340 MucB/RseB C-terminal domain-containing protein 0.28 ABID97_RS13975 LysE family transporter low > 91
Serratia liquefaciens MT49 0.12 IAI46_19575 sigma-E factor regulatory protein RseB 0.34 IAI46_00780 homoserine/homoserine lactone efflux protein low > 86
Castellaniella sp019104865 MT123 0.12 ABCV34_RS08345 MucB/RseB C-terminal domain-containing protein 0.49 ABCV34_RS12510 LysE family transporter low > 48
Variovorax sp. SCN45 0.12 GFF3865 Sigma factor RpoE negative regulatory protein RseB precursor 0.39 GFF2024 L-lysine permease low > 127

Not shown: 10 genomes with orthologs for PFLU_RS07240 only; 9 genomes with orthologs for PFLU_RS29150 only