Conservation of cofitness between PFLU_RS07240 and PFLU_RS13385 in Pseudomonas fluorescens SBW25

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 1.0 PFLU_RS13385 mannitol dehydrogenase family protein 0.57 12
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 1.00 PFLU_RS13385 mannitol dehydrogenase family protein low > 109
Pseudomonas simiae WCS417 0.92 PS417_07130 RNA polymerase sigma-H factor AlgU 0.92 PS417_12695 mannitol dehydrogenase low > 88
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_17635 RNA polymerase subunit sigma 0.85 AO353_25900 mannitol dehydrogenase low > 101
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_3325 Sigma factor RpoE negative regulatory protein RseB precursor 0.82 Pf1N1B4_4846 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) low > 87
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_4514 Sigma factor RpoE negative regulatory protein RseB precursor 0.81 PfGW456L13_3038 mannitol 2-dehydrogenase (EC 1.1.1.67) (from data) low > 87
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_04565 RNA polymerase subunit sigma 0.83 AO356_27690 mannitol dehydrogenase low > 104
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_2754 Sigma factor RpoE negative regulatory protein RseB precursor 0.83 Pf6N2E2_806 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) low > 103
Pseudomonas sp. RS175 0.70 PFR28_00692 Sigma factor AlgU regulatory protein MucB 0.83 PFR28_01709 Polyol:NADP oxidoreductase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.80 Psyr_2436 Mannitol dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.80 Psyr_2436 Mannitol dehydrogenase low > 86
Burkholderia phytofirmans PsJN 0.17 BPHYT_RS14395 sugar dehydratase 0.34 BPHYT_RS28510 dioxygenase low > 109
Paraburkholderia graminis OAS925 0.16 ABIE53_003041 sigma-E factor negative regulatory protein RseB 0.33 ABIE53_005161 fructuronate reductase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.16 H281DRAFT_04357 sigma E regulatory protein, MucB/RseB 0.33 H281DRAFT_01519 fructuronate reductase low > 103
Paraburkholderia sabiae LMG 24235 0.16 QEN71_RS04585 MucB/RseB C-terminal domain-containing protein 0.24 QEN71_RS02630 mannitol dehydrogenase family protein low > 153
Cupriavidus basilensis FW507-4G11 0.15 RR42_RS14070 sugar dehydratase 0.33 RR42_RS34965 dioxygenase low > 128
Pantoea sp. MT58 0.15 IAI47_04860 sigma-E factor regulatory protein RseB 0.33 IAI47_06820 mannitol dehydrogenase family protein low > 76
Herbaspirillum seropedicae SmR1 0.14 HSERO_RS09635 transcriptional regulator 0.24 HSERO_RS02215 D-arabinitol 4-dehydrogenase low > 78
Dickeya dianthicola ME23 0.14 DZA65_RS16920 sigma-E factor regulatory protein RseB 0.35 DZA65_RS03760 fructuronate reductase low > 75
Dickeya dianthicola 67-19 0.14 HGI48_RS15840 sigma-E factor regulatory protein RseB 0.35 HGI48_RS03640 fructuronate reductase low > 71
Dickeya dadantii 3937 0.14 DDA3937_RS15755 sigma-E factor regulatory protein RseB 0.36 DDA3937_RS14980 mannitol dehydrogenase family protein low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.14 GFF2109 Sigma factor RpoE negative regulatory protein RseB precursor 0.34 GFF3094 D-mannonate oxidoreductase (EC 1.1.1.57) low > 78
Acidovorax sp. GW101-3H11 0.13 Ac3H11_1571 Sigma factor RpoE negative regulatory protein RseB precursor 0.25 Ac3H11_2939 D-arabinitol 4-dehydrogenase (EC 1.1.1.11) — —
Klebsiella michiganensis M5al 0.13 BWI76_RS21345 sigma-E factor regulatory protein RseB 0.35 BWI76_RS19755 fructuronate reductase low > 92
Enterobacter sp. TBS_079 0.13 MPMX20_03442 Sigma-E factor regulatory protein RseB 0.33 MPMX20_03138 Polyol:NADP oxidoreductase low > 85
Enterobacter asburiae PDN3 0.13 EX28DRAFT_0074 sigma E regulatory protein, MucB/RseB 0.34 EX28DRAFT_1454 Mannitol-1-phosphate/altronate dehydrogenases low > 76
Rahnella sp. WP5 0.13 EX31_RS21810 sigma-E factor regulatory protein RseB 0.33 EX31_RS19095 fructuronate reductase low > 89
Escherichia coli ECRC62 0.13 BNILDI_11860 rseB sigma-E factor regulatory protein RseB 0.34 BNILDI_07710 uxuB D-mannonate oxidoreductase low > 75
Escherichia coli BL21 0.13 ECD_02465 anti-sigma E factor, binds RseA 0.34 ECD_04192 D-mannonate oxidoreductase, NAD-dependent low > 61
Escherichia fergusonii Becca 0.13 EFB2_01325 Sigma-E factor regulatory protein RseB 0.35 EFB2_04121 Polyol:NADP oxidoreductase low > 86
Escherichia coli ECRC99 0.13 KEDOAH_06835 rseB sigma-E factor regulatory protein RseB 0.34 KEDOAH_16585 uxuB D-mannonate oxidoreductase — —
Escherichia coli ECRC98 0.13 JDDGAC_25050 rseB sigma-E factor regulatory protein RseB 0.34 JDDGAC_15155 uxuB D-mannonate oxidoreductase low > 86
Escherichia coli BW25113 0.13 b2571 rseB periplasmic negative regulator of sigmaE (NCBI) 0.34 b4323 uxuB D-mannonate oxidoreductase, NAD-binding (NCBI) low > 76
Escherichia coli ECRC102 0.13 NIAGMN_19155 rseB sigma-E factor regulatory protein RseB 0.34 NIAGMN_09410 uxuB D-mannonate oxidoreductase — —
Escherichia coli ECOR38 0.13 HEPCGN_20530 rseB sigma-E factor regulatory protein RseB 0.34 HEPCGN_09570 uxuB D-mannonate oxidoreductase low > 87
Escherichia coli ECRC101 0.13 MCAODC_11915 rseB sigma-E factor regulatory protein RseB 0.34 MCAODC_02075 uxuB D-mannonate oxidoreductase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.13 OHPLBJKB_01136 Sigma-E factor regulatory protein RseB 0.34 OHPLBJKB_03744 Polyol:NADP oxidoreductase low > 73
Escherichia coli ECRC100 0.13 OKFHMN_21385 rseB sigma-E factor regulatory protein RseB 0.34 OKFHMN_11560 uxuB D-mannonate oxidoreductase low > 80
Ralstonia solanacearum GMI1000 0.13 RS_RS05235 sugar dehydratase 0.25 RS_RS10685 D-arabinitol 4-dehydrogenase — —
Escherichia coli ECOR27 0.13 NOLOHH_13060 rseB sigma-E factor regulatory protein RseB 0.34 NOLOHH_03885 uxuB D-mannonate oxidoreductase low > 75
Escherichia coli Nissle 1917 0.13 ECOLIN_RS14550 sigma-E factor regulatory protein RseB 0.34 ECOLIN_RS24840 fructuronate reductase — —
Pectobacterium carotovorum WPP14 0.13 HER17_RS05790 sigma-E factor regulatory protein RseB 0.34 HER17_RS17590 fructuronate reductase low > 75
Ralstonia sp. UNC404CL21Col 0.13 ABZR87_RS10175 MucB/RseB C-terminal domain-containing protein 0.22 ABZR87_RS18665 D-arabinitol 4-dehydrogenase low > 80
Serratia liquefaciens MT49 0.12 IAI46_19575 sigma-E factor regulatory protein RseB 0.34 IAI46_17285 fructuronate reductase low > 86
Variovorax sp. SCN45 0.12 GFF3865 Sigma factor RpoE negative regulatory protein RseB precursor 0.35 GFF179 D-mannonate oxidoreductase (EC 1.1.1.57) low > 127

Not shown: 16 genomes with orthologs for PFLU_RS07240 only; 23 genomes with orthologs for PFLU_RS13385 only