Conservation of cofitness between MCAODC_14410 and MCAODC_00390 in Escherichia coli ECRC101

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC101 1.0 MCAODC_14410 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.0 MCAODC_00390 tssF Type VI secretion system protein TssF 0.59 20
Escherichia coli ECRC102 1.00 NIAGMN_21125 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 NIAGMN_07720 tssF Type VI secretion system protein TssF — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS12760 16S rRNA pseudouridine(516) synthase RsuA 0.18 ECOLIN_RS15765 type VI secretion system baseplate subunit TssF — —
Escherichia coli ECRC99 1.00 KEDOAH_04825 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 KEDOAH_18280 tssF Type VI secretion system protein TssF — —
Escherichia coli ECRC100 1.00 OKFHMN_23360 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 OKFHMN_09870 tssF Type VI secretion system protein TssF low > 80
Escherichia coli ECOR27 1.00 NOLOHH_14935 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 NOLOHH_02230 tssF Type VI secretion system protein TssF low > 75
Escherichia coli ECRC98 1.00 JDDGAC_27320 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 JDDGAC_13470 tssF Type VI secretion system protein TssF low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01526 Ribosomal small subunit pseudouridine synthase A 1.00 OHPLBJKB_03430 hypothetical protein low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF3753 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.13 GFF4050 Protein ImpG/VasA low > 78
Enterobacter asburiae PDN3 0.91 EX28DRAFT_0378 pseudouridine synthase 0.18 EX28DRAFT_0259 type VI secretion protein, VC_A0110 family low > 76
Enterobacter sp. TBS_079 0.90 MPMX20_03149 Ribosomal small subunit pseudouridine synthase A 0.17 MPMX20_01644 hypothetical protein low > 85
Pantoea sp. MT58 0.84 IAI47_06585 16S rRNA pseudouridine(516) synthase RsuA 0.17 IAI47_17375 type VI secretion system baseplate subunit TssF low > 76
Serratia liquefaciens MT49 0.83 IAI46_17345 16S rRNA pseudouridine(516) synthase RsuA 0.13 IAI46_05550 type VI secretion system baseplate subunit TssF low > 86
Erwinia tracheiphila SCR3 0.82 LU632_RS17595 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.49 LU632_RS17675 tssF type VI secretion system baseplate subunit TssF low > 74
Dickeya dadantii 3937 0.81 DDA3937_RS09160 16S rRNA pseudouridine(516) synthase RsuA 0.41 DDA3937_RS07030 type VI secretion system baseplate subunit TssF low > 74
Pectobacterium carotovorum WPP14 0.81 HER17_RS12950 16S rRNA pseudouridine(516) synthase RsuA 0.40 HER17_RS04855 type VI secretion system baseplate subunit TssF low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS09200 16S rRNA pseudouridine(516) synthase RsuA 0.40 HGI48_RS07960 type VI secretion system baseplate subunit TssF low > 71
Dickeya dianthicola ME23 0.80 DZA65_RS09500 16S rRNA pseudouridine(516) synthase RsuA 0.40 DZA65_RS08555 type VI secretion system baseplate subunit TssF low > 75
Rahnella sp. WP5 0.79 EX31_RS19195 16S rRNA pseudouridine(516) synthase RsuA 0.17 EX31_RS01975 type VI secretion system baseplate subunit TssF low > 89
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_08220 16S rRNA pseudouridine(516) synthase 0.39 CSW01_14565 type VI secretion system baseplate subunit TssF low > 62
Marinobacter adhaerens HP15 0.44 HP15_3359 pseudouridine synthase, Rsu 0.40 HP15_3473 type VI secretion system, VCA0110 low > 73
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_3297 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.28 Pf1N1B4_2086 Protein ImpG/VasA low > 87
Pseudomonas simiae WCS417 0.42 PS417_07010 pseudouridine synthase 0.28 PS417_15310 type VI secretion protein low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_3981 ribosomal small subunit pseudouridine synthase A 0.17 Psyr_4956 protein of unknown function DUF879 low > 86
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS07085 pseudouridine synthase 0.14 PFLU_RS29650 type VI secretion system baseplate subunit TssF low > 109
Pseudomonas fluorescens SBW25 0.42 PFLU_RS07085 pseudouridine synthase 0.14 PFLU_RS29650 type VI secretion system baseplate subunit TssF low > 109
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_3981 ribosomal small subunit pseudouridine synthase A 0.17 Psyr_4956 protein of unknown function DUF879 low > 86
Pseudomonas sp. RS175 0.41 PFR28_00665 Ribosomal small subunit pseudouridine synthase A 0.14 PFR28_04462 hypothetical protein low > 88
Pseudomonas sp. S08-1 0.40 OH686_05950 SSU rRNA pseudouridine(516) synthase 0.27 OH686_12825 T6SS component TssF (ImpG/VasA) low > 80
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_17535 16S rRNA pseudouridine(516) synthase 0.27 AO353_09425 type VI secretion protein low > 101
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_2785 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.28 Pf6N2E2_4301 Protein ImpG/VasA low > 103
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_04690 16S rRNA pseudouridine(516) synthase 0.28 AO356_12145 type VI secretion protein low > 104
Pseudomonas putida KT2440 0.38 PP_1409 ribosomal small subunit pseudouridine synthase A 0.34 PP_4077 conserved protein of unknown function low > 96
Pseudomonas stutzeri RCH2 0.38 Psest_3049 pseudouridine synthase 0.26 Psest_0127 type VI secretion protein, VC_A0110 family low > 67
Variovorax sp. SCN45 0.34 GFF3076 SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) 0.15 GFF6367 T6SS component TssF (ImpG/VasA) low > 127
Variovorax sp. OAS795 0.33 ABID97_RS09900 16S rRNA pseudouridine(516) synthase 0.20 ABID97_RS12940 type VI secretion system baseplate subunit TssF low > 91
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS00325 16S rRNA pseudouridine(516) synthase 0.13 ABZR86_RS04940 type VI secretion system baseplate subunit TssF low > 74
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS15880 pseudouridine synthase 0.21 RR42_RS22110 type VI secretion protein ImpG low > 128
Paraburkholderia graminis OAS925 0.28 ABIE53_003276 16S rRNA pseudouridine516 synthase 0.15 ABIE53_003935 type VI secretion system protein ImpG low > 113
Burkholderia phytofirmans PsJN 0.28 BPHYT_RS15560 pseudouridine synthase 0.15 BPHYT_RS24415 type VI secretion protein low > 109
Paraburkholderia bryophila 376MFSha3.1 0.28 H281DRAFT_04053 ribosomal small subunit pseudouridine synthase A (EC 5.4.99.-) 0.14 H281DRAFT_05367 type VI secretion system protein ImpG low > 103
Herbaspirillum seropedicae SmR1 0.27 HSERO_RS08590 pseudouridine synthase 0.15 HSERO_RS03720 type VI secretion protein low > 78
Acinetobacter radioresistens SK82 0.27 MPMX26_01203 Ribosomal small subunit pseudouridine synthase A 0.13 MPMX26_00966 hypothetical protein — —

Not shown: 20 genomes with orthologs for MCAODC_14410 only; 9 genomes with orthologs for MCAODC_00390 only