| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS21530 | | cytochrome C550 | 1.0 | HSERO_RS20990 | | aminotransferase DegT | 0.63 | 15 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.55 | H281DRAFT_02054 | | penicillin-binding protein 6. Serine peptidase. MEROPS family S11 | 0.28 | H281DRAFT_04834 | | dTDP-4-amino-4,6-dideoxygalactose transaminase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.55 | QEN71_RS01300 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.31 | QEN71_RS25700 | | DegT/DnrJ/EryC1/StrS family aminotransferase | low | > 153 |
| Dechlorosoma suillum PS | 0.51 | Dsui_0899 | | D-alanyl-D-alanine carboxypeptidase | 0.36 | Dsui_1769 | | putative PLP-dependent enzyme possibly involved in cell wall biogenesis | low | > 51 |
| Variovorax sp. SCN45 | 0.49 | GFF3627 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.36 | GFF6876 | | Aminotransferase, DegT/DnrJ/EryC1/StrS family | low | > 127 |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS00695 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.70 | ABID97_RS02180 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.63 | 15 |
| Castellaniella sp019104865 MT123 | 0.48 | ABCV34_RS13340 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.32 | ABCV34_RS12945 | | DegT/DnrJ/EryC1/StrS family aminotransferase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.46 | GFF1806 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.29 | GFF1844 | | Aminotransferase | low | > 90 |
| Pseudomonas fluorescens FW300-N2C3 | 0.42 | AO356_15330 | | D-alanyl-D-alanine carboxypeptidase | 0.56 | AO356_03400 | | aminotransferase DegT | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_1364 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.23 | PfGW456L13_3984 | | Lipopolysaccharide biosynthesis protein RffA | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.41 | ABZR86_RS17490 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.53 | ABZR86_RS18520 | | DegT/DnrJ/EryC1/StrS family aminotransferase | — | — |
| Rhodanobacter denitrificans MT42 | 0.41 | LRK55_RS06235 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.26 | LRK55_RS04940 | | DegT/DnrJ/EryC1/StrS family aminotransferase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.41 | LRK54_RS06490 | | D-alanyl-D-alanine carboxypeptidase | 0.26 | LRK54_RS05160 | | DegT/DnrJ/EryC1/StrS family aminotransferase | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.40 | OKGIIK_00090 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.25 | OKGIIK_14750 | | Aminotransferase | — | — |
| Escherichia coli ECRC98 | 0.37 | JDDGAC_09675 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.25 | JDDGAC_18170 | rffA | dTDP-4-amino-4,6-dideoxygalactose transaminase | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.37 | OHPLBJKB_02871 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.25 | OHPLBJKB_04263 | | dTDP-4-amino-4,6-dideoxygalactose transaminase | low | > 73 |
| Escherichia coli ECRC102 | 0.37 | NIAGMN_04085 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.25 | NIAGMN_12300 | rffA | dTDP-4-amino-4,6-dideoxygalactose transaminase | — | — |
| Escherichia coli ECRC62 | 0.37 | BNILDI_20670 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.25 | BNILDI_04845 | rffA | dTDP-4-amino-4,6-dideoxygalactose transaminase | low | > 75 |
| Escherichia coli Nissle 1917 | 0.37 | ECOLIN_RS04460 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.24 | ECOLIN_RS21760 | | dTDP-4-amino-4,6-dideoxygalactose transaminase | — | — |
| Escherichia coli ECRC99 | 0.37 | KEDOAH_21870 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.25 | KEDOAH_13605 | rffA | dTDP-4-amino-4,6-dideoxygalactose transaminase | — | — |
| Escherichia coli BW25113 | 0.37 | b0839 | dacC | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) | 0.25 | b3791 | rffA | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.37 | ECD_00806 | | D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a | 0.25 | ECD_03669 | | TDP-4-oxo-6-deoxy-D-glucose transaminase | low | > 61 |
| Escherichia coli ECRC100 | 0.37 | OKFHMN_06040 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.25 | OKFHMN_14545 | rffA | dTDP-4-amino-4,6-dideoxygalactose transaminase | low | > 80 |
| Escherichia coli ECOR27 | 0.37 | NOLOHH_22410 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.25 | NOLOHH_06680 | rffA | dTDP-4-amino-4,6-dideoxygalactose transaminase | low | > 75 |
| Escherichia coli ECRC101 | 0.37 | MCAODC_25255 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.25 | MCAODC_05050 | rffA | dTDP-4-amino-4,6-dideoxygalactose transaminase | low | > 87 |
| Escherichia coli ECOR38 | 0.37 | HEPCGN_01990 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.25 | HEPCGN_13255 | rffA | dTDP-4-amino-4,6-dideoxygalactose transaminase | 0.44 | 83 |
| Escherichia fergusonii Becca | 0.37 | EFB2_03267 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.25 | EFB2_04848 | | dTDP-4-amino-4,6-dideoxygalactose transaminase | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.36 | HER17_RS12545 | | serine hydrolase | 0.30 | HER17_RS14580 | | DegT/DnrJ/EryC1/StrS family aminotransferase | low | > 75 |
| Enterobacter asburiae PDN3 | 0.36 | EX28DRAFT_2127 | | D-alanyl-D-alanine carboxypeptidase | 0.23 | EX28DRAFT_4459 | | TDP-4-keto-6-deoxy-D-glucose transaminase | 0.63 | 1 |
| Klebsiella michiganensis M5al | 0.36 | BWI76_RS09145 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.24 | BWI76_RS01115 | | dTDP-4-amino-4,6-dideoxygalactose transaminase | low | > 92 |
| Pantoea sp. MT58 | 0.36 | IAI47_07170 | | serine-type D-Ala-D-Ala carboxypeptidase DacD | 0.24 | IAI47_18485 | | dTDP-4-amino-4,6-dideoxygalactose transaminase | low | > 76 |
| Enterobacter sp. TBS_079 | 0.36 | MPMX20_01477 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.23 | MPMX20_04484 | | dTDP-4-amino-4,6-dideoxygalactose transaminase | low | > 85 |
| Shewanella amazonensis SB2B | 0.36 | Sama_2592 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | 0.39 | Sama_2257 | | DegT/DnrJ/EryC1/StrS family protein (RefSeq) | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.36 | Xcc-8004.907.1 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.29 | Xcc-8004.3174.1 | | Aminotransferase | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.36 | LU632_RS16390 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | 0.22 | LU632_RS24225 | rffA | dTDP-4-amino-4,6-dideoxygalactose transaminase | 0.76 | 19 |
| Rhodospirillum rubrum S1H | 0.35 | Rru_A1704 | | Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) | 0.27 | Rru_A0933 | | DegT/DnrJ/EryC1/StrS aminotransferase (NCBI) | — | — |
| Azospirillum brasilense Sp245 | 0.35 | AZOBR_RS08775 | | D-alanyl-D-alanine carboxypeptidase | 0.30 | AZOBR_RS33605 | | erythromycin biosynthesis sensory transduction protein eryC1 | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.35 | GFF744 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.24 | GFF2882 | | Lipopolysaccharide biosynthesis protein RffA | low | > 78 |
| Sphingomonas koreensis DSMZ 15582 | 0.34 | Ga0059261_0122 | | D-alanyl-D-alanine carboxypeptidase | 0.64 | Ga0059261_3110 | | Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis | — | — |
| Magnetospirillum magneticum AMB-1 | 0.30 | AMB_RS12315 | | D-alanyl-D-alanine carboxypeptidase | 0.38 | AMB_RS00640 | | DegT/DnrJ/EryC1/StrS family aminotransferase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_014370 | | D-alanyl-D-alanine carboxypeptidase | 0.41 | TX73_020615 | | DegT/DnrJ/EryC1/StrS family aminotransferase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.29 | PGA1_c08020 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.32 | PGA1_c05070 | | putative pyridoxal-phosphate-dependent aminotransferase | — | — |
Not shown: 41 genomes with orthologs for HSERO_RS21530 only; 12 genomes with orthologs for HSERO_RS20990 only