Conservation of cofitness between HSERO_RS09800 and HSERO_RS20320 in Herbaspirillum seropedicae SmR1

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS09800 hypothetical protein 1.0 HSERO_RS20320 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.33 16
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS05215 YbdD/YjiX family protein 0.72 ABZR87_RS02475 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase — —
Ralstonia solanacearum GMI1000 0.64 RS_RS00115 DUF466 domain-containing protein 0.73 RS_RS14765 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase — —
Dickeya dadantii 3937 0.63 DDA3937_RS16355 YbdD/YjiX family protein 0.24 DDA3937_RS09715 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase — —
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS09515 DUF466 domain-containing protein 0.73 RALBFv3_RS06820 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase — —
Pseudomonas putida KT2440 0.61 PP_4640 conserved protein of unknown function 0.55 PP_0292 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) low > 96
Ralstonia solanacearum UW163 0.61 UW163_RS04065 DUF466 domain-containing protein 0.73 UW163_RS06795 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase — —
Ralstonia solanacearum PSI07 0.61 RPSI07_RS23835 DUF466 domain-containing protein 0.73 RPSI07_RS10415 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase — —
Escherichia coli ECRC62 0.61 BNILDI_21930 ybdD Uncharacterized protein YbdD 0.22 BNILDI_14720 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase low > 75
Escherichia coli BL21 0.61 ECD_00566 DUF466 family protein 0.22 ECD_01926 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase low > 61
Escherichia coli ECRC99 0.61 KEDOAH_20425 ybdD Uncharacterized protein YbdD 0.22 KEDOAH_03655 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_03107 hypothetical protein 0.22 OHPLBJKB_01676 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase low > 73
Escherichia coli ECOR38 0.61 HEPCGN_00735 ybdD Uncharacterized protein YbdD 0.22 HEPCGN_03200 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase low > 87
Pseudomonas sp. S08-1 0.61 OH686_16215 Uncharacterized YbdD and YjiX 0.56 OH686_14590 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase low > 80
Escherichia coli ECRC100 0.61 OKFHMN_07545 ybdD Uncharacterized protein YbdD 0.22 OKFHMN_24495 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase low > 80
Escherichia coli ECRC102 0.61 NIAGMN_05600 ybdD Uncharacterized protein YbdD 0.22 NIAGMN_22440 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase — —
Escherichia coli ECRC98 0.61 JDDGAC_11190 ybdD Uncharacterized protein YbdD 0.22 JDDGAC_28605 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase low > 86
Escherichia coli ECRC101 0.61 MCAODC_26760 ybdD Uncharacterized protein YbdD 0.22 MCAODC_20445 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase low > 87
Escherichia coli BW25113 0.61 b4512 ybdD hypothetical protein (NCBI) 0.21 b2024 hisA N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase (VIMSS) — —
Escherichia fergusonii Becca 0.61 EFB2_03493 hypothetical protein 0.22 EFB2_01832 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase low > 86
Escherichia coli Nissle 1917 0.61 ECOLIN_RS03285 YbdD/YjiX family protein 0.22 ECOLIN_RS11965 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase — —
Escherichia coli ECOR27 0.61 NOLOHH_23920 ybdD Uncharacterized protein YbdD 0.22 NOLOHH_15810 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase low > 75
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_2772 COG2879, Hypothetical small protein yjiX 0.55 Pf1N1B4_1624 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) low > 87
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_1445 COG2879, Hypothetical small protein yjiX 0.54 PfGW456L13_359 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.37 27
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_13995 hypothetical protein 0.55 AO353_12085 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) low > 101
Klebsiella michiganensis M5al 0.59 BWI76_RS03815 hypothetical protein 0.23 BWI76_RS18945 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase — —
Dickeya dianthicola ME23 0.59 DZA65_RS17540 YbdD/YjiX family protein 0.24 DZA65_RS10035 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase — —
Dickeya dianthicola 67-19 0.59 HGI48_RS16455 YbdD/YjiX family protein 0.24 HGI48_RS09725 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4506 COG2879, Hypothetical small protein yjiX 0.22 GFF3908 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) low > 78
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_5079 COG2879, Hypothetical small protein yjiX 0.54 Pf6N2E2_3839 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) — —
Rahnella sp. WP5 0.59 EX31_RS00790 YbdD/YjiX family protein 0.24 EX31_RS11460 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase low > 89
Pectobacterium carotovorum WPP14 0.59 HER17_RS15650 YbdD/YjiX family protein 0.24 HER17_RS12250 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase low > 75
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_15695 hypothetical protein 0.54 AO356_09800 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) — —
Rhodospirillum rubrum S1H 0.58 Rru_A0260 Protein of unknown function DUF466 (NCBI) 0.44 Rru_A3595 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (NCBI) — —
Enterobacter asburiae PDN3 0.58 EX28DRAFT_3535 Uncharacterized small protein 0.22 EX28DRAFT_0535 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) low > 76
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_4272 Protein of unknown function DUF466 0.55 Psyr_4894 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase low > 86
Pseudomonas sp. RS175 0.58 PFR28_03789 hypothetical protein 0.52 PFR28_04932 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_4272 Protein of unknown function DUF466 0.55 Psyr_4894 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase low > 86
Erwinia tracheiphila SCR3 0.57 LU632_RS20445 YbdD/YjiX family protein 0.23 LU632_RS08925 hisA 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase low > 74
Pseudomonas simiae WCS417 0.57 PS417_24290 hypothetical protein 0.55 PS417_01575 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) 0.30 26
Cupriavidus basilensis FW507-4G11 0.57 RR42_RS20510 small component of pyruvate transporter (ybdD-like) (from data) 0.71 RR42_RS18890 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase — —
Pseudomonas fluorescens SBW25 0.56 PFLU_RS26205 YbdD/YjiX family protein 0.55 PFLU_RS01620 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase low > 109
Serratia liquefaciens MT49 0.56 IAI46_02545 YbdD/YjiX family protein 0.23 IAI46_08190 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase low > 86
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS26205 YbdD/YjiX family protein 0.55 PFLU_RS01620 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase low > 109
Variovorax sp. SCN45 0.55 GFF1738 Uncharacterized proteins YbdD and YjiX 0.74 GFF5351 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) — —
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS32875 YbdD/YjiX family protein 0.73 QEN71_RS27840 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase low > 153
Variovorax sp. OAS795 0.54 ABID97_RS22450 YbdD/YjiX family protein 0.73 ABID97_RS23130 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase — —
Rhodanobacter denitrificans MT42 0.51 LRK55_RS04470 YbdD/YjiX family protein 0.25 LRK55_RS01365 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase low > 63
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS04690 YbdD/YjiX family protein 0.25 LRK54_RS01585 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase low > 59
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS19265 YbdD/YjiX family protein 0.25 ABZR86_RS06710 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase low > 74
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_11480 DUF466 domain-containing protein 0.25 OKGIIK_04970 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase low > 52
Azospirillum brasilense Sp245 0.44 AZOBR_RS18100 hypothetical protein 0.49 AZOBR_RS01680 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) low > 97

Not shown: 0 genomes with orthologs for HSERO_RS09800 only; 50 genomes with orthologs for HSERO_RS20320 only