Conservation of cofitness between HSERO_RS21530 and HSERO_RS08535 in Herbaspirillum seropedicae SmR1

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS21530 cytochrome C550 1.0 HSERO_RS08535 glycine/betaine ABC transporter substrate-binding protein 0.64 10
Cupriavidus basilensis FW507-4G11 0.58 RR42_RS01680 cytochrome C550 0.53 RR42_RS04815 glycine/betaine ABC transporter substrate-binding protein low > 128
Paraburkholderia bryophila 376MFSha3.1 0.55 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 0.47 H281DRAFT_03487 osmoprotectant transport system substrate-binding protein low > 103
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein 0.50 QEN71_RS19710 glycine betaine ABC transporter substrate-binding protein low > 153
Paraburkholderia graminis OAS925 0.55 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) 0.47 ABIE53_001496 osmoprotectant transport system substrate-binding protein low > 113
Pseudomonas fluorescens SBW25 0.43 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.47 PFLU_RS04060 glycine betaine ABC transporter substrate-binding protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.47 PFLU_RS04060 glycine betaine ABC transporter substrate-binding protein low > 109
Pseudomonas simiae WCS417 0.43 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.47 PS417_04020 glycine/betaine ABC transporter substrate-binding protein low > 88
Pseudomonas putida KT2440 0.43 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.42 PP_0870 putative Glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein low > 96
Marinobacter adhaerens HP15 0.42 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase 0.22 HP15_991 substrate-binding region of ABC-type glycine betaine transport system — —
Pseudomonas sp. RS175 0.42 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.46 PFR28_00116 Osmoprotectant-binding protein OsmX low > 88
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.48 AO356_07295 glycine/betaine ABC transporter substrate-binding protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.48 Pf6N2E2_3331 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation 0.25 87
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.48 PfGW456L13_5063 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.48 Psyr_4251 Substrate-binding region of ABC-type glycine betaine transport system low > 86
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.48 Psyr_4251 Substrate-binding region of ABC-type glycine betaine transport system low > 86
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.49 AO353_05430 glycine/betaine ABC transporter substrate-binding protein 0.28 82
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.49 Pf1N1B4_1132 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation — —
Rahnella sp. WP5 0.38 EX31_RS07145 serine hydrolase 0.24 EX31_RS23935 ABC transporter substrate-binding protein low > 89
Escherichia coli ECRC102 0.37 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.22 NIAGMN_21425 osmF glycine betaine ABC transporter substrate-binding protein OsmF — —
Escherichia coli ECRC98 0.37 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.22 JDDGAC_27615 osmF glycine betaine ABC transporter substrate-binding protein OsmF low > 86
Escherichia coli Nissle 1917 0.37 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase 0.22 ECOLIN_RS25495 glycine betaine ABC transporter substrate-binding protein OsmF — —
Escherichia coli ECRC100 0.37 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.22 OKFHMN_23660 osmF glycine betaine ABC transporter substrate-binding protein OsmF 0.56 75
Escherichia coli BW25113 0.37 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) 0.22 b2131 yehZ predicted transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) low > 76
Escherichia coli ECRC62 0.37 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.22 BNILDI_14150 osmF glycine betaine ABC transporter substrate-binding protein OsmF low > 75
Escherichia coli ECRC101 0.37 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.22 MCAODC_14710 osmF glycine betaine ABC transporter substrate-binding protein OsmF low > 87
Escherichia coli ECOR38 0.37 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.23 HEPCGN_02235 osmF glycine betaine ABC transporter substrate-binding protein OsmF low > 87
Escherichia coli BL21 0.37 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a 0.22 ECD_02061 putative ABC transporter periplasmic binding protein low > 61
Escherichia coli ECRC99 0.37 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.22 KEDOAH_04525 osmF glycine betaine ABC transporter substrate-binding protein OsmF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC 0.22 OHPLBJKB_01579 Glycine betaine-binding protein YehZ low > 73
Escherichia coli ECOR27 0.37 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.22 NOLOHH_15200 osmF glycine betaine ABC transporter substrate-binding protein OsmF low > 75
Escherichia fergusonii Becca 0.37 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC 0.23 EFB2_01724 Glycine betaine-binding protein YehZ low > 86
Enterobacter asburiae PDN3 0.36 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase 0.45 EX28DRAFT_1488 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) low > 76
Klebsiella michiganensis M5al 0.36 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase 0.23 BWI76_RS19505 ABC transporter substrate-binding protein low > 92
Pantoea sp. MT58 0.36 IAI47_07170 serine-type D-Ala-D-Ala carboxypeptidase DacD 0.45 IAI47_09775 glycine betaine ABC transporter substrate-binding protein low > 76
Enterobacter sp. TBS_079 0.36 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC 0.46 MPMX20_02068 Osmoprotectant-binding protein OsmX low > 85
Erwinia tracheiphila SCR3 0.36 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.38 LU632_RS12285 glycine/betaine ABC transporter substrate-binding protein low > 74
Rhodospirillum rubrum S1H 0.35 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) 0.21 Rru_A2385 Substrate-binding region of ABC-type glycine betaine transport system (NCBI) — —
Serratia liquefaciens MT49 0.35 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.23 IAI46_07365 ABC transporter substrate-binding protein low > 86
Azospirillum brasilense Sp245 0.35 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase 0.19 AZOBR_RS15770 osmoprotectant uptake system substrate-binding protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.42 GFF1780 Putative ABC transporter periplasmic binding protein low > 78
Azospirillum sp. SherDot2 0.34 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC 0.23 MPMX19_05108 Glycine betaine-binding protein YehZ — —
Bosea sp. OAE506 0.31 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein 0.24 ABIE41_RS21060 glycine betaine ABC transporter substrate-binding protein — —
Sinorhizobium meliloti 1021 0.25 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein 0.40 SMa1462 ABC transporter — —
Rhizobium sp. OAE497 0.24 ABIE40_RS09505 D-alanyl-D-alanine carboxypeptidase family protein 0.21 ABIE40_RS02190 ABC transporter substrate-binding protein low > 107
Agrobacterium fabrum C58 0.24 Atu1499 penicillin binding protein 0.21 Atu0199 ABC transporter, substrate binding protein (proline/glycine/betaine) low > 89

Not shown: 37 genomes with orthologs for HSERO_RS21530 only; 1 genomes with orthologs for HSERO_RS08535 only