Conservation of cofitness between HSERO_RS16435 and HSERO_RS02410 in Herbaspirillum seropedicae SmR1

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS16435 LOG family protein 1.0 HSERO_RS02410 acriflavine resistance protein B 0.32 19
Ralstonia solanacearum GMI1000 0.54 RS_RS10470 TIGR00730 family Rossman fold protein 0.76 RS_RS00045 multidrug efflux RND transporter permease subunit low > 80
Ralstonia solanacearum PSI07 0.53 RPSI07_RS14205 TIGR00730 family Rossman fold protein 0.76 RPSI07_RS23905 hydrophobe/amphiphile efflux-1 family RND transporter low > 81
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_132 Lysine decarboxylase family 0.63 PfGW456L13_2954 RND efflux system, inner membrane transporter CmeB low > 87
Pseudomonas putida KT2440 0.53 PP_4871 putative lysine decarboxylase family protein 0.62 PP_3456 Multidrug resistance protein MexB low > 96
Pseudomonas sp. RS175 0.53 PFR28_05145 'Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase' transl_table=11 0.63 PFR28_02463 Multidrug resistance protein MexB low > 88
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_3589 Lysine decarboxylase family 0.63 Pf6N2E2_1661 RND efflux system, inner membrane transporter CmeB low > 103
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_08535 LOG family protein 0.63 AO356_28730 acriflavine resistance protein B low > 104
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS03100 TIGR00730 family Rossman fold protein 0.76 RALBFv3_RS09445 multidrug efflux RND transporter permease subunit low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS10625 TIGR00730 family Rossman fold protein 0.76 UW163_RS04135 multidrug efflux RND transporter permease subunit — —
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_1389 Lysine decarboxylase family 0.64 Pf1N1B4_4772 RND efflux system, inner membrane transporter CmeB low > 87
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS15005 TIGR00730 family Rossman fold protein 0.75 ABZR87_RS05315 efflux RND transporter permease subunit low > 80
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS05385 LOG family protein 0.66 RR42_RS20650 multidrug efflux RND transporter permease subunit low > 128
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_13300 LOG family protein 0.63 AO353_26845 acriflavine resistance protein B low > 101
Lysobacter sp. OAE881 0.49 ABIE51_RS08970 TIGR00730 family Rossman fold protein 0.50 ABIE51_RS17980 multidrug efflux RND transporter permease subunit low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.49 CA264_15135 TIGR00730 family Rossman fold protein 0.35 CA264_03655 multidrug efflux RND transporter permease subunit low > 74
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_05925 TIGR00730 family Rossman fold protein 0.49 OKGIIK_09170 Efflux pump membrane transporter 0.42 28
Mucilaginibacter yixingensis YX-36 DSM 26809 0.47 ABZR88_RS10320 TIGR00730 family Rossman fold protein 0.36 ABZR88_RS12545 efflux RND transporter permease subunit low > 71
Marinobacter adhaerens HP15 0.47 HP15_3835 conserved hypothetical protein 0.40 HP15_933 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family low > 73
Acidovorax sp. GW101-3H11 0.46 Ac3H11_519 Lysine decarboxylase family 0.68 Ac3H11_4448 RND efflux system, inner membrane transporter CmeB low > 79
Rhodanobacter denitrificans MT42 0.46 LRK55_RS00740 TIGR00730 family Rossman fold protein 0.48 LRK55_RS01875 multidrug efflux RND transporter permease subunit low > 63
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS00965 TIGR00730 family Rossman fold protein 0.48 LRK54_RS02100 multidrug efflux RND transporter permease subunit low > 59
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF4273 Lysine decarboxylase family 0.68 GFF3840 RND efflux system, inner membrane transporter CmeB low > 90
Echinicola vietnamensis KMM 6221, DSM 17526 0.45 Echvi_0909 TIGR00730 family protein 0.36 Echvi_3740 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.43 CA265_RS10665 Rossman fold protein, TIGR00730 family 0.34 CA265_RS23010 hydrophobe/amphiphile efflux-1 family RND transporter low > 88
Variovorax sp. OAS795 0.43 ABID97_RS14855 TIGR00730 family Rossman fold protein 0.67 ABID97_RS00325 efflux RND transporter permease subunit low > 91
Variovorax sp. SCN45 0.42 GFF1152 Lysine decarboxylase family 0.67 GFF3725 RND efflux system, inner membrane transporter low > 127
Desulfovibrio vulgaris Miyazaki F 0.42 DvMF_1885 hypothetical protein (RefSeq) 0.43 DvMF_2163 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq) low > 51
Bacteroides thetaiotaomicron VPI-5482 0.40 BT3224 putative lysine decarboxylase (NCBI ptt file) 0.36 BT0886 putative cation efflux pump (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.37 ABI39_RS05550 TIGR00730 family Rossman fold protein 0.39 ABI39_RS18725 multidrug efflux RND transporter permease subunit low > 72
Bacteroides stercoris CC31F 0.37 HMPREF1181_RS01670 TIGR00730 family Rossman fold protein 0.36 HMPREF1181_RS14290 efflux RND transporter permease subunit low > 56
Parabacteroides merdae CL09T00C40 0.37 HMPREF1078_RS06240 TIGR00730 family Rossman fold protein 0.36 HMPREF1078_RS08425 efflux RND transporter permease subunit low > 61
Bacteroides ovatus ATCC 8483 0.36 BACOVA_02921 TIGR00730 family protein 0.37 BACOVA_02607 RND transporter, HAE1 family low > 94
Castellaniella sp019104865 MT123 0.36 ABCV34_RS10940 TIGR00730 family Rossman fold protein 0.58 ABCV34_RS04225 efflux RND transporter permease subunit low > 48

Not shown: 24 genomes with orthologs for HSERO_RS16435 only; 12 genomes with orthologs for HSERO_RS02410 only