Conservation of cofitness between HGI48_RS14410 and HGI48_RS16185 in Dickeya dianthicola 67-19

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola 67-19 1.0 HGI48_RS14410 colicin V production protein 1.0 HGI48_RS16185 murein transglycosylase D 0.77 5
Dickeya dianthicola ME23 1.00 DZA65_RS15340 colicin V production protein 0.99 DZA65_RS17270 murein transglycosylase D low > 75
Dickeya dadantii 3937 1.00 DDA3937_RS14440 colicin V production protein 0.96 DDA3937_RS16065 murein transglycosylase D low > 74
Pectobacterium carotovorum WPP14 0.96 HER17_RS07015 colicin V production protein 0.76 HER17_RS05450 murein transglycosylase D low > 75
Rahnella sp. WP5 0.94 EX31_RS19575 colicin V production protein 0.67 EX31_RS21205 murein transglycosylase D low > 89
Serratia liquefaciens MT49 0.93 IAI46_17815 colicin V production protein 0.70 IAI46_04130 murein transglycosylase D low > 86
Pantoea sp. MT58 0.89 IAI47_06270 colicin V production protein 0.64 IAI47_15345 murein transglycosylase D low > 76
Enterobacter sp. TBS_079 0.87 MPMX20_03248 Colicin V production protein 0.61 MPMX20_00896 Membrane-bound lytic murein transglycosylase D low > 85
Enterobacter asburiae PDN3 0.87 EX28DRAFT_0291 Uncharacterized membrane protein, required for colicin V production 0.61 EX28DRAFT_2683 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) low > 76
Klebsiella michiganensis M5al 0.86 BWI76_RS20355 colicin V production protein 0.61 BWI76_RS05435 murein transglycosylase D low > 92
Escherichia coli ECOR38 0.85 HEPCGN_21905 cvpA colicin V production protein 0.56 HEPCGN_07925 mltD murein transglycosylase D low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF1928 Colicin V production protein 0.56 GFF4043 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_01392 Colicin V production protein 0.56 OHPLBJKB_03450 Membrane-bound lytic murein transglycosylase D low > 73
Escherichia coli Nissle 1917 0.85 ECOLIN_RS13410 colicin V production protein 0.61 ECOLIN_RS01155 murein transglycosylase D low > 55
Escherichia coli BL21 0.85 ECD_02238 colicin V production protein 0.61 ECD_00204 putative membrane-bound lytic murein transglycosylase D low > 61
Escherichia coli ECRC62 0.85 BNILDI_13250 cvpA colicin V production protein 0.56 BNILDI_09340 mltD murein transglycosylase D low > 75
Escherichia fergusonii Becca 0.85 EFB2_01545 Colicin V production protein 0.55 EFB2_03832 Membrane-bound lytic murein transglycosylase D low > 86
Escherichia coli ECOR27 0.85 NOLOHH_14330 cvpA colicin V production protein 0.56 NOLOHH_02330 mltD murein transglycosylase D low > 75
Escherichia coli ECRC101 0.85 MCAODC_13750 cvpA colicin V production protein 0.56 MCAODC_00500 mltD murein transglycosylase D low > 87
Escherichia coli ECRC102 0.85 NIAGMN_20480 cvpA colicin V production protein 0.56 NIAGMN_07835 mltD murein transglycosylase D — —
Escherichia coli ECRC99 0.85 KEDOAH_05485 cvpA colicin V production protein 0.56 KEDOAH_18170 mltD murein transglycosylase D — —
Escherichia coli ECRC100 0.85 OKFHMN_22710 cvpA colicin V production protein 0.56 OKFHMN_09985 mltD murein transglycosylase D low > 80
Escherichia coli ECRC98 0.85 JDDGAC_26670 cvpA colicin V production protein 0.56 JDDGAC_13580 mltD murein transglycosylase D low > 86
Escherichia coli BW25113 0.84 b2313 cvpA membrane protein required for colicin V production (NCBI) 0.61 b0211 mltD predicted membrane-bound lytic murein transglycosylase D (NCBI) low > 76
Shewanella loihica PV-4 0.71 Shew_2303 colicin V production protein (RefSeq) 0.30 Shew_2115 lytic transglycosylase, catalytic (RefSeq) — —
Shewanella oneidensis MR-1 0.69 SO3065 colicin V production protein (NCBI ptt file) 0.30 SO2564 transglycosylase, Slt family (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.69 Sama_2147 colicin V production protein (RefSeq) 0.28 Sama_1885 Slt family transglycosylase (RefSeq) low > 62
Shewanella sp. ANA-3 0.69 Shewana3_1482 colicin V production protein (RefSeq) 0.30 Shewana3_2370 MltD domain-containing protein (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_05110 bacteriocin production protein 0.34 CSW01_11400 lytic transglycosylase low > 62
Alteromonas macleodii MIT1002 0.64 MIT1002_02525 Pur regulon 18 kDa protein 0.33 MIT1002_02495 Membrane-bound lytic murein transglycosylase D precursor 0.67 19
Kangiella aquimarina DSM 16071 0.47 B158DRAFT_1487 Uncharacterized membrane protein, required for colicin V production 0.29 B158DRAFT_1060 FOG: LysM repeat low > 40
Pseudomonas fluorescens FW300-N2E3 0.37 AO353_20685 colicin V production CvpA 0.31 AO353_23485 lytic transglycosylase 0.33 37
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_3936 Colicin V production protein 0.32 PfGW456L13_3341 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) low > 87
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_1 Colicin V production protein 0.31 Pf1N1B4_4595 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) — —
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS20520 colicin V production protein CvpA 0.32 PFLU_RS12905 transglycosylase SLT domain-containing protein low > 109
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_75 Colicin V production protein 0.32 Pf6N2E2_586 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) 0.44 64
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_21460 colicin V production CvpA 0.32 AO356_24475 lytic transglycosylase 0.47 8
Pseudomonas simiae WCS417 0.35 PS417_18540 colicin V production CvpA 0.32 PS417_12215 lytic transglycosylase low > 88
Pseudomonas fluorescens SBW25 0.35 PFLU_RS20520 colicin V production protein CvpA 0.32 PFLU_RS12905 transglycosylase SLT domain-containing protein low > 109
Pseudomonas sp. S08-1 0.34 OH686_04425 Colicin V production protein 0.30 OH686_03585 Membrane-bound lytic murein transglycosylase D low > 80
Pseudomonas stutzeri RCH2 0.32 Psest_2580 Uncharacterized membrane protein, required for colicin V production 0.29 Psest_2070 FOG: LysM repeat low > 67
Pseudomonas sp. RS175 0.30 PFR28_02812 hypothetical protein 0.32 PFR28_01551 Membrane-bound lytic murein transglycosylase D low > 88
Paraburkholderia sabiae LMG 24235 0.23 QEN71_RS17675 CvpA family protein 0.22 QEN71_RS04765 transglycosylase SLT domain-containing protein 0.68 24
Burkholderia phytofirmans PsJN 0.22 BPHYT_RS33845 bacteriocin production protein 0.23 BPHYT_RS14205 lytic transglycosylase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.22 H281DRAFT_06061 membrane protein required for colicin V production 0.22 H281DRAFT_04400 membrane-bound lytic murein transglycosylase D low > 103
Castellaniella sp019104865 MT123 0.21 ABCV34_RS04135 CvpA family protein 0.19 ABCV34_RS10490 transglycosylase SLT domain-containing protein low > 48
Ralstonia solanacearum PSI07 0.18 RPSI07_RS14760 colicin V synthesis protein 0.20 RPSI07_RS15235 lytic transglycosylase low > 81
Variovorax sp. OAS795 0.18 ABID97_RS21640 CvpA family protein 0.21 ABID97_RS14725 transglycosylase SLT domain-containing protein — —

Not shown: 9 genomes with orthologs for HGI48_RS14410 only; 8 genomes with orthologs for HGI48_RS16185 only