Conservation of cofitness between HGI48_RS14455 and HGI48_RS11520 in Dickeya dianthicola 67-19

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola 67-19 1.0 HGI48_RS14455 transcriptional regulator TctD 1.0 HGI48_RS11520 23S rRNA pseudouridine(2457) synthase RluE 0.45 20
Dickeya dianthicola ME23 0.99 DZA65_RS15390 transcriptional regulator TctD 0.99 DZA65_RS11855 23S rRNA pseudouridine(2457) synthase RluE low > 75
Dickeya dadantii 3937 0.96 DDA3937_RS14485 transcriptional regulator TctD 0.95 DDA3937_RS11475 23S rRNA pseudouridine(2457) synthase RluE low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF1558 Tricarboxylate transport transcriptional regulator TctD 0.70 GFF3421 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) low > 78
Serratia liquefaciens MT49 0.74 IAI46_17870 transcriptional regulator TctD 0.70 IAI46_10455 23S rRNA pseudouridine(2457) synthase RluE low > 86
Klebsiella michiganensis M5al 0.71 BWI76_RS20030 DNA-binding response regulator 0.69 BWI76_RS11325 23S rRNA pseudouridine synthase E — —
Pantoea sp. MT58 0.71 IAI47_06215 transcriptional regulator TctD 0.64 IAI47_11905 23S rRNA pseudouridine(2457) synthase RluE low > 76
Enterobacter sp. TBS_079 0.70 MPMX20_03192 Transcriptional regulatory protein tctD 0.69 MPMX20_01819 Ribosomal large subunit pseudouridine synthase E low > 85
Pseudomonas stutzeri RCH2 0.56 Psest_0204 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.51 Psest_0568 pseudouridine synthase low > 67
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_4524 Tricarboxylate transport transcriptional regulator TctD 0.51 PfGW456L13_1389 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_3316 Tricarboxylate transport transcriptional regulator TctD 0.50 Pf1N1B4_2722 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_2765 Tricarboxylate transport transcriptional regulator TctD 0.51 Pf6N2E2_5028 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) low > 103
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_17590 transcriptional regulator 0.51 AO353_06330 pseudouridine synthase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_3965 Response regulator receiver:Transcriptional regulatory protein, C-terminal 0.52 Psyr_4336 ribosomal large subunit pseudouridine synthase E low > 86
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_3965 Response regulator receiver:Transcriptional regulatory protein, C-terminal 0.52 Psyr_4336 ribosomal large subunit pseudouridine synthase E low > 86
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_04610 transcriptional regulator 0.50 AO356_15455 pseudouridine synthase low > 104
Pseudomonas sp. RS175 0.54 PFR28_00683 Transcriptional regulatory protein tctD 0.50 PFR28_03839 Ribosomal large subunit pseudouridine synthase E low > 88
Pseudomonas sp. S08-1 0.54 OH686_20005 Tricarboxylate transport transcriptional regulator TctD 0.51 OH686_08840 LSU rRNA pseudouridine(2457) synthase low > 80
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS07160 response regulator 0.52 PFLU_RS26510 pseudouridine synthase low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS07160 response regulator 0.52 PFLU_RS26510 pseudouridine synthase low > 109
Pseudomonas simiae WCS417 0.53 PS417_07085 transcriptional regulator 0.52 PS417_24580 pseudouridine synthase low > 88
Pseudomonas putida KT2440 0.53 PP_1420 Transcriptional regulatory protein tctD 0.51 PP_4778 23S rRNA pseudouridine 2457 synthase low > 96
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS22665 transcriptional regulator 0.44 HSERO_RS07010 pseudouridine synthase low > 78
Paraburkholderia graminis OAS925 0.48 ABIE53_005556 two-component system response regulator TctD 0.40 ABIE53_003318 23S rRNA pseudouridine2457 synthase low > 113
Acidovorax sp. GW101-3H11 0.48 Ac3H11_114 Tricarboxylate transport transcriptional regulator TctD 0.50 Ac3H11_10 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) low > 79
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_02602 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain 0.39 H281DRAFT_04086 23S rRNA pseudouridine2457 synthase low > 103
Variovorax sp. SCN45 0.46 GFF581 Tricarboxylate transport transcriptional regulator TctD 0.49 GFF6670 LSU rRNA pseudouridine(2457) synthase (EC 5.4.99.20) low > 127
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS20095 transcriptional regulator 0.38 BPHYT_RS15735 pseudouridine synthase low > 109
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS15285 response regulator 0.39 QEN71_RS02975 pseudouridine synthase low > 153
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.1026.1 Tricarboxylate transport transcriptional regulator TctD 0.44 Xcc-8004.351.1 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 74
Azospirillum sp. SherDot2 0.41 MPMX19_04133 Transcriptional regulatory protein tctD 0.52 MPMX19_00077 Ribosomal large subunit pseudouridine synthase E low > 112
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS09380 response regulator transcription factor 0.49 ABZR86_RS13170 pseudouridine synthase low > 74
Rhodanobacter denitrificans MT42 0.39 LRK55_RS02695 response regulator 0.51 LRK55_RS09590 pseudouridine synthase low > 63
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS02945 response regulator 0.51 LRK54_RS09950 pseudouridine synthase low > 59
Magnetospirillum magneticum AMB-1 0.38 AMB_RS00960 DNA-binding response regulator 0.53 AMB_RS12420 pseudouridine synthase low > 64

Not shown: 10 genomes with orthologs for HGI48_RS14455 only; 29 genomes with orthologs for HGI48_RS11520 only