Conservation of cofitness between HER17_RS20550 and HER17_RS21700 in Pectobacterium carotovorum WPP14

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS20550 fatty acid oxidation complex subunit alpha FadB 1.0 HER17_RS21700 XRE family transcriptional regulator 0.69 2
Serratia liquefaciens MT49 0.78 IAI46_01130 fatty acid oxidation complex subunit alpha FadB 0.60 IAI46_11440 helix-turn-helix transcriptional regulator low > 86
Escherichia coli BW25113 0.75 b3846 fadB fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase (NCBI) 0.53 b1434 ydcN predicted DNA-binding transcriptional regulator (NCBI) low > 76
Escherichia coli ECOR27 0.75 NOLOHH_06375 fadB fatty acid oxidation complex subunit alpha FadB 0.53 NOLOHH_19280 sutR DNA-binding transcriptional regulator SutR low > 75
Escherichia coli ECRC98 0.75 JDDGAC_17870 fadB fatty acid oxidation complex subunit alpha FadB 0.53 JDDGAC_04095 sutR DNA-binding transcriptional regulator SutR low > 86
Escherichia coli ECRC102 0.75 NIAGMN_12000 fadB fatty acid oxidation complex subunit alpha FadB 0.53 NIAGMN_25740 sutR DNA-binding transcriptional regulator SutR — —
Escherichia coli ECRC101 0.75 MCAODC_04750 fadB fatty acid oxidation complex subunit alpha FadB 0.53 MCAODC_16335 sutR DNA-binding transcriptional regulator SutR low > 87
Escherichia coli ECOR38 0.75 HEPCGN_12875 fadB fatty acid oxidation complex subunit alpha FadB 0.52 HEPCGN_26215 sutR DNA-binding transcriptional regulator SutR low > 87
Escherichia coli ECRC100 0.75 OKFHMN_14245 fadB fatty acid oxidation complex subunit alpha FadB 0.53 OKFHMN_01605 sutR DNA-binding transcriptional regulator SutR low > 80
Escherichia coli ECRC99 0.75 KEDOAH_13905 fadB fatty acid oxidation complex subunit alpha FadB 0.53 KEDOAH_26835 sutR DNA-binding transcriptional regulator SutR — —
Enterobacter asburiae PDN3 0.74 EX28DRAFT_4510 fatty oxidation complex, alpha subunit FadB 0.53 EX28DRAFT_1223 Cupin domain/Helix-turn-helix low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_04207 Fatty acid oxidation complex subunit alpha 0.53 OHPLBJKB_02281 HTH-type transcriptional regulator SutR low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF273 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.51 GFF2595 Transcriptional regulator yidN, Cro/CI family low > 78
Enterobacter sp. TBS_079 0.73 MPMX20_04436 Fatty acid oxidation complex subunit alpha 0.53 MPMX20_02243 HTH-type transcriptional regulator SutR low > 85
Escherichia coli ECRC62 0.73 BNILDI_05155 fadB fatty acid oxidation complex subunit alpha FadB 0.53 BNILDI_17730 sutR DNA-binding transcriptional regulator SutR low > 75
Klebsiella michiganensis M5al 0.73 BWI76_RS01365 multifunctional fatty acid oxidation complex subunit alpha 0.50 BWI76_RS13370 hypothetical protein low > 92
Escherichia coli BL21 0.73 ECD_03737 fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.53 ECD_01392 putative DNA-binding transcriptional regulator — —
Escherichia fergusonii Becca 0.73 EFB2_04771 Fatty acid oxidation complex subunit alpha 0.52 EFB2_02548 HTH-type transcriptional regulator SutR low > 86
Rahnella sp. WP5 0.73 EX31_RS14565 fatty acid oxidation complex subunit alpha FadB 0.61 EX31_RS05710 helix-turn-helix transcriptional regulator low > 89
Dickeya dadantii 3937 0.72 DDA3937_RS20250 fatty acid oxidation complex subunit alpha FadB 0.24 DDA3937_RS01955 helix-turn-helix domain-containing protein low > 74
Pantoea sp. MT58 0.71 IAI47_18230 fatty acid oxidation complex subunit alpha FadB 0.48 IAI47_10265 helix-turn-helix domain-containing protein low > 76
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_13970 fatty acid oxidation complex subunit alpha FadB 0.34 CSW01_09830 XRE family transcriptional regulator low > 62
Shewanella oneidensis MR-1 0.58 SO0021 fadB fatty oxidation complex, alpha subunit (NCBI ptt file) 0.19 SO1265 transcriptional regulator, putative (NCBI ptt file) 0.32 38
Shewanella sp. ANA-3 0.58 Shewana3_0024 fadB Enoyl-CoA hydratase (EC 4.2.1.17); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) (from data) 0.49 Shewana3_0319 XRE family transcriptional regulator (RefSeq) low > 73
Shewanella loihica PV-4 0.58 Shew_0019 fadB multifunctional fatty acid oxidation complex subunit alpha (RefSeq) 0.20 Shew_0970 XRE family transcriptional regulator (RefSeq) low > 60
Shewanella amazonensis SB2B 0.57 Sama_0032 fadB Enoyl-CoA hydratase (EC 4.2.1.17); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) (from data) 0.18 Sama_2646 XRE family transcriptional regulator (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.55 MIT1002_00575 Fatty acid oxidation complex subunit alpha 0.36 MIT1002_00748 DNA-binding transcriptional repressor PuuR low > 70
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_3290 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase 0.17 Psyr_0238 Helix-turn-helix motif protein low > 86
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_3290 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase 0.17 Psyr_0238 Helix-turn-helix motif protein low > 86
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS07650 fatty acid oxidation complex subunit alpha FadB 0.29 PFLU_RS18295 helix-turn-helix domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS07650 fatty acid oxidation complex subunit alpha FadB 0.29 PFLU_RS18295 helix-turn-helix domain-containing protein low > 109
Pseudomonas simiae WCS417 0.53 PS417_07575 multifunctional fatty acid oxidation complex subunit alpha 0.18 PS417_27690 XRE family transcriptional regulator low > 88
Pseudomonas sp. RS175 0.52 PFR28_01110 Fatty acid oxidation complex subunit alpha 0.18 PFR28_04396 HTH-type transcriptional regulator PuuR low > 88
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_3903 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.31 Pf1N1B4_4417 Transcriptional regulator — —
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_2290 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.18 Pf6N2E2_4394 Putrescine utilization regulator — —
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_4041 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.17 PfGW456L13_815 Putrescine utilization regulator low > 87
Pseudomonas stutzeri RCH2 0.52 Psest_2654 fatty oxidation complex, alpha subunit FadB 0.20 Psest_3791 Predicted transcriptional regulators — —
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_00510 multifunctional fatty acid oxidation complex subunit alpha 0.18 AO353_09140 XRE family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_02330 multifunctional fatty acid oxidation complex subunit alpha 0.31 AO356_23675 hydroxyacid dehydrogenase — —
Pseudomonas putida KT2440 0.52 PP_2136 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.17 PP_5268 DNA-binding transcriptional repressor PuuR-putrescine low > 96
Pseudomonas sp. S08-1 0.52 OH686_21925 fatty oxidation complex, alpha subunit FadB 0.16 OH686_13700 Putrescine utilization regulator low > 80
Rhodopseudomonas palustris CGA009 0.24 TX73_019255 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein 0.29 TX73_013495 XRE family transcriptional regulator low > 86
Ralstonia sp. UNC404CL21Col 0.23 ABZR87_RS12585 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein 0.22 ABZR87_RS22690 XRE family transcriptional regulator low > 80
Ralstonia solanacearum PSI07 0.22 RPSI07_RS16345 3-hydroxyacyl-CoA dehydrogenase 0.21 RPSI07_RS09440 helix-turn-helix domain-containing protein low > 81
Ralstonia solanacearum GMI1000 0.22 RS_RS08885 3-hydroxyacyl-CoA dehydrogenase 0.22 RS_RS21755 XRE family transcriptional regulator low > 80
Ralstonia solanacearum UW163 0.22 UW163_RS14440 3-hydroxyacyl-CoA dehydrogenase 0.18 UW163_RS05790 helix-turn-helix domain-containing protein — —

Not shown: 8 genomes with orthologs for HER17_RS20550 only; 23 genomes with orthologs for HER17_RS21700 only