Conservation of cofitness between HER17_RS21560 and HER17_RS21525 in Pectobacterium carotovorum WPP14

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS21560 response regulator 1.0 HER17_RS21525 ribose operon transcriptional repressor RbsR 0.56 18
Dickeya dianthicola 67-19 0.82 HGI48_RS21345 response regulator 0.81 HGI48_RS21310 ribose operon transcriptional repressor RbsR low > 71
Dickeya dianthicola ME23 0.81 DZA65_RS22325 response regulator 0.75 DZA65_RS22290 substrate-binding domain-containing protein low > 75
Pantoea sp. MT58 0.79 IAI47_00340 response regulator 0.73 IAI47_00375 ribose operon transcriptional repressor RbsR low > 76
Rahnella sp. WP5 0.76 EX31_RS03275 response regulator 0.76 EX31_RS06195 ribose operon transcriptional repressor RbsR low > 89
Enterobacter asburiae PDN3 0.74 EX28DRAFT_3057 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.71 EX28DRAFT_4029 transcriptional regulator, LacI family low > 76
Serratia liquefaciens MT49 0.74 IAI46_21235 response regulator 0.77 IAI46_25050 ribose operon transcriptional repressor RbsR low > 86
Enterobacter sp. TBS_079 0.72 MPMX20_03863 Transcriptional regulatory protein QseB 0.72 MPMX20_04614 Ribose operon repressor low > 85
Klebsiella michiganensis M5al 0.72 BWI76_RS24335 two-component system response regulator QseB 0.71 BWI76_RS00295 transcriptional regulator RbsR low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF3138 Two-component system response regulator QseB 0.72 GFF1704 Ribose operon repressor low > 78
Escherichia coli ECRC101 0.71 MCAODC_09395 Transcriptional regulatory protein QseB 0.70 MCAODC_05230 rbsR ribose operon transcriptional repressor RbsR low > 87
Escherichia coli ECRC100 0.71 OKFHMN_18880 Transcriptional regulatory protein QseB 0.70 OKFHMN_14725 rbsR ribose operon transcriptional repressor RbsR low > 80
Escherichia coli ECRC102 0.71 NIAGMN_16645 Transcriptional regulatory protein QseB 0.70 NIAGMN_12480 rbsR ribose operon transcriptional repressor RbsR — —
Escherichia coli ECOR27 0.71 NOLOHH_10660 Transcriptional regulatory protein QseB 0.70 NOLOHH_06860 rbsR ribose operon transcriptional repressor RbsR low > 75
Escherichia coli ECRC99 0.71 KEDOAH_09265 Transcriptional regulatory protein QseB 0.70 KEDOAH_13425 rbsR ribose operon transcriptional repressor RbsR — —
Escherichia coli ECRC62 0.71 BNILDI_00855 Transcriptional regulatory protein QseB 0.70 BNILDI_04665 rbsR ribose operon transcriptional repressor RbsR low > 75
Escherichia coli ECRC98 0.71 JDDGAC_22515 Transcriptional regulatory protein QseB 0.70 JDDGAC_18345 rbsR ribose operon transcriptional repressor RbsR low > 86
Escherichia coli BW25113 0.71 b3025 qseB DNA-binding response regulator in two-component regulatory system with QseC (NCBI) 0.70 b3753 rbsR DNA-binding transcriptional repressor of ribose metabolism (NCBI) low > 76
Escherichia coli ECOR38 0.70 HEPCGN_17740 Quorum sensing DNA-binding response regulator in two-component regulatory system with QseC 0.70 HEPCGN_13435 rbsR ribose operon transcriptional repressor RbsR low > 87
Escherichia fergusonii Becca 0.70 EFB2_00788 Transcriptional regulatory protein QseB 0.70 EFB2_04880 Ribose operon repressor low > 86
Escherichia coli BL21 0.70 ECD_02897 quorum sensing DNA-binding response regulator in two-component regulatory system with QseC 0.70 ECD_03639 transcriptional repressor of ribose metabolism low > 61
Escherichia coli Nissle 1917 0.70 ECOLIN_RS17425 quorum sensing response regulator transcription factor QseB 0.69 ECOLIN_RS21575 ribose operon transcriptional repressor RbsR low > 55
Paraburkholderia graminis OAS925 0.55 ABIE53_003418 two-component system response regulator QseB 0.35 ABIE53_002322 LacI family transcriptional regulator low > 113
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF700 Two-component system response regulator QseB 0.24 GFF4454 Transcriptional regulator, LacI family low > 90
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS21985 transcriptional regulator 0.37 HSERO_RS11495 LacI family transcription regulator low > 78
Variovorax sp. SCN45 0.51 GFF1175 Two-component system response regulator QseB 0.37 GFF2137 Ribose operon repressor low > 127
Pseudomonas simiae WCS417 0.50 PS417_13595 XRE family transcriptional regulator 0.36 PS417_18390 LacI family transcriptional regulator low > 88
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS37390 XRE family transcriptional regulator 0.24 RR42_RS34650 LacI family transcriptional regulator low > 128
Pseudomonas fluorescens SBW25-INTG 0.49 PFLU_RS15245 response regulator 0.37 PFLU_RS20365 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.49 PFLU_RS15245 response regulator 0.37 PFLU_RS20365 LacI family DNA-binding transcriptional regulator 0.41 61
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_23845 XRE family transcriptional regulator 0.38 AO356_00955 LacI family transcriptional regulator low > 104
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS22890 response regulator transcription factor 0.37 ABZR87_RS09955 LacI family DNA-binding transcriptional regulator low > 80
Ralstonia solanacearum GMI1000 0.48 RS_RS24590 DNA-binding response regulator 0.38 RS_RS05020 LacI family transcriptional regulator low > 80
Ralstonia solanacearum PSI07 0.47 RPSI07_RS07290 DNA-binding response regulator 0.38 RPSI07_RS19225 LacI family transcriptional regulator low > 81
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3511 Response regulator receiver:Transcriptional regulatory protein, C-terminal 0.37 Psyr_2154 transcriptional regulator, LacI family low > 86
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3511 Response regulator receiver:Transcriptional regulatory protein, C-terminal 0.37 Psyr_2154 transcriptional regulator, LacI family low > 86
Rhodanobacter denitrificans MT42 0.44 LRK55_RS13865 response regulator transcription factor 0.28 LRK55_RS08435 LacI family DNA-binding transcriptional regulator low > 63
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS14145 response regulator transcription factor 0.28 LRK54_RS08670 LacI family transcriptional regulator low > 59
Shewanella oneidensis MR-1 0.42 SO2104 DNA-binding response regulator YgiX, putative (NCBI ptt file) 0.24 SO3516 transcriptional regulator, LacI family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.41 Shewana3_1885 two component transcriptional regulator (RefSeq) 0.24 Shewana3_3122 LacI family transcription regulator (RefSeq) low > 73
Lysobacter sp. OAE881 0.40 ABIE51_RS00875 response regulator transcription factor 0.28 ABIE51_RS08800 LacI family DNA-binding transcriptional regulator low > 62
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.4942.1 Two-component system regulatory protein 0.29 Xcc-8004.5254.1 Transcriptional regulator, LacI family low > 74

Not shown: 22 genomes with orthologs for HER17_RS21560 only; 13 genomes with orthologs for HER17_RS21525 only