Conservation of cofitness between HER17_RS21560 and HER17_RS17280 in Pectobacterium carotovorum WPP14

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS21560 response regulator 1.0 HER17_RS17280 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.59 6
Dickeya dianthicola 67-19 0.82 HGI48_RS21345 response regulator 0.91 HGI48_RS04345 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 71
Dickeya dianthicola ME23 0.81 DZA65_RS22325 response regulator 0.91 DZA65_RS04265 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 75
Rahnella sp. WP5 0.76 EX31_RS03275 response regulator 0.89 EX31_RS20275 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 89
Enterobacter asburiae PDN3 0.74 EX28DRAFT_3057 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.87 EX28DRAFT_0198 Malic enzyme low > 76
Serratia liquefaciens MT49 0.74 IAI46_21235 response regulator 0.91 IAI46_18585 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 86
Klebsiella michiganensis M5al 0.72 BWI76_RS24335 two-component system response regulator QseB 0.88 BWI76_RS20830 bifunctional malic enzyme oxidoreductase/phosphotransacetylase low > 92
Enterobacter sp. TBS_079 0.72 MPMX20_03863 Transcriptional regulatory protein QseB 0.87 MPMX20_03324 NADP-dependent malic enzyme low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF3138 Two-component system response regulator QseB 0.87 GFF2198 NADP-dependent malic enzyme (EC 1.1.1.40) low > 78
Escherichia coli ECOR27 0.71 NOLOHH_10660 Transcriptional regulatory protein QseB 0.87 NOLOHH_13685 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 75
Escherichia coli ECRC100 0.71 OKFHMN_18880 Transcriptional regulatory protein QseB 0.87 OKFHMN_22005 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 80
Escherichia coli ECRC99 0.71 KEDOAH_09265 Transcriptional regulatory protein QseB 0.86 KEDOAH_06215 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase — —
Escherichia coli ECRC62 0.71 BNILDI_00855 Transcriptional regulatory protein QseB 0.87 BNILDI_12495 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 75
Escherichia coli ECRC98 0.71 JDDGAC_22515 Transcriptional regulatory protein QseB 0.87 JDDGAC_25950 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 86
Escherichia coli ECRC102 0.71 NIAGMN_16645 Transcriptional regulatory protein QseB 0.87 NIAGMN_19775 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase — —
Escherichia coli ECRC101 0.71 MCAODC_09395 Transcriptional regulatory protein QseB 0.87 MCAODC_12535 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 87
Escherichia coli BW25113 0.71 b3025 qseB DNA-binding response regulator in two-component regulatory system with QseC (NCBI) 0.87 b2463 maeB malic enzyme (NCBI) low > 76
Escherichia fergusonii Becca 0.70 EFB2_00788 Transcriptional regulatory protein QseB 0.87 EFB2_01425 NADP-dependent malic enzyme low > 86
Escherichia coli BL21 0.70 ECD_02897 quorum sensing DNA-binding response regulator in two-component regulatory system with QseC 0.86 ECD_02354 malic enzyme: putative oxidoreductase/phosphotransacetylase low > 61
Escherichia coli ECOR38 0.70 HEPCGN_17740 Quorum sensing DNA-binding response regulator in two-component regulatory system with QseC 0.87 HEPCGN_21175 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 87
Escherichia coli Nissle 1917 0.70 ECOLIN_RS17425 quorum sensing response regulator transcription factor QseB 0.87 ECOLIN_RS14055 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_00677 Transcriptional regulatory protein QseB 0.87 OHPLBJKB_01268 NADP-dependent malic enzyme low > 73
Paraburkholderia graminis OAS925 0.55 ABIE53_003418 two-component system response regulator QseB 0.64 ABIE53_000015 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) low > 113
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS16220 transcriptional regulator 0.64 BPHYT_RS18310 malic enzyme — —
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_04180 two component transcriptional regulator, winged helix family 0.64 H281DRAFT_05846 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) low > 103
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS02475 response regulator 0.65 QEN71_RS28455 NADP-dependent malic enzyme low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF700 Two-component system response regulator QseB 0.61 GFF3306 NADP-dependent malic enzyme (EC 1.1.1.40) low > 90
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS21985 transcriptional regulator 0.64 HSERO_RS16825 NADP-dependent malic enzyme oxidoreductase low > 78
Variovorax sp. SCN45 0.51 GFF1175 Two-component system response regulator QseB 0.62 GFF1796 NADP-dependent malic enzyme (EC 1.1.1.40) low > 127
Variovorax sp. OAS795 0.50 ABID97_RS14955 response regulator 0.63 ABID97_RS22340 NADP-dependent malic enzyme low > 91
Dechlorosoma suillum PS 0.50 Dsui_3448 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain 0.63 Dsui_0543 malic enzyme low > 51
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS37390 XRE family transcriptional regulator 0.63 RR42_RS05210 malic enzyme low > 128
Acidovorax sp. GW101-3H11 0.49 Ac3H11_3946 Two-component system response regulator QseB 0.61 Ac3H11_1079 NADP-dependent malic enzyme (EC 1.1.1.40) low > 79
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS22890 response regulator transcription factor 0.61 ABZR87_RS15110 NADP-dependent malic enzyme low > 80
Ralstonia solanacearum GMI1000 0.48 RS_RS24590 DNA-binding response regulator 0.62 RS_RS10650 NADP-dependent malic enzyme low > 80
Ralstonia solanacearum PSI07 0.47 RPSI07_RS07290 DNA-binding response regulator 0.62 RPSI07_RS14050 NADP-dependent malic enzyme low > 81
Ralstonia solanacearum UW163 0.46 UW163_RS17155 DNA-binding response regulator 0.62 UW163_RS10465 NADP-dependent malic enzyme — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS16415 DNA-binding response regulator 0.62 RALBFv3_RS03260 NADP-dependent malic enzyme low > 76
Acinetobacter radioresistens SK82 0.44 MPMX26_03174 Transcriptional regulatory protein QseB 0.62 MPMX26_01000 NADP-dependent malic enzyme low > 36
Rhodanobacter denitrificans MT42 0.44 LRK55_RS13865 response regulator transcription factor 0.59 LRK55_RS10875 NADP-dependent malic enzyme — —
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS14145 response regulator transcription factor 0.59 LRK54_RS11170 NADP-dependent malic enzyme low > 59
Brevundimonas sp. GW460-12-10-14-LB2 0.44 A4249_RS11495 response regulator transcription factor 0.41 A4249_RS13295 NADP-dependent malic enzyme — —
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS20365 response regulator transcription factor 0.60 ABZR86_RS12415 NADP-dependent malic enzyme low > 74
Lysobacter sp. OAE881 0.40 ABIE51_RS00875 response regulator transcription factor 0.61 ABIE51_RS18820 NADP-dependent malic enzyme low > 62
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.4942.1 Two-component system regulatory protein 0.58 Xcc-8004.1035.1 NADP-dependent malic enzyme (EC 1.1.1.40) — —

Not shown: 19 genomes with orthologs for HER17_RS21560 only; 27 genomes with orthologs for HER17_RS17280 only