Conservation of cofitness between HER17_RS05585 and HER17_RS16000 in Pectobacterium carotovorum WPP14

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS05585 DNA/RNA nuclease SfsA 1.0 HER17_RS16000 ACP phosphodiesterase 0.65 7
Serratia liquefaciens MT49 0.75 IAI46_21205 DNA/RNA nuclease SfsA 0.71 IAI46_04830 DUF479 domain-containing protein low > 86
Dickeya dianthicola 67-19 0.72 HGI48_RS16045 DNA/RNA nuclease SfsA 0.79 HGI48_RS05520 DUF479 domain-containing protein low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS17130 DNA/RNA nuclease SfsA 0.79 DZA65_RS05845 DUF479 domain-containing protein low > 75
Dickeya dadantii 3937 0.72 DDA3937_RS15930 DNA/RNA nuclease SfsA 0.78 DDA3937_RS05460 DUF479 domain-containing protein low > 74
Rahnella sp. WP5 0.71 EX31_RS03245 DNA/RNA nuclease SfsA 0.71 EX31_RS22085 DUF479 domain-containing protein low > 89
Pantoea sp. MT58 0.67 IAI47_15630 DNA/RNA nuclease SfsA 0.55 IAI47_14815 DUF479 domain-containing protein low > 76
Erwinia tracheiphila SCR3 0.67 LU632_RS20075 sfsA DNA/RNA nuclease SfsA 0.48 LU632_RS18480 ACP phosphodiesterase low > 74
Enterobacter sp. TBS_079 0.67 MPMX20_00832 Sugar fermentation stimulation protein A 0.57 MPMX20_00995 Acyl carrier protein phosphodiesterase low > 85
Escherichia coli ECRC62 0.66 BNILDI_08985 sfsA DNA/RNA nuclease SfsA 0.56 BNILDI_22865 acpH ACP phosphodiesterase low > 75
Escherichia coli ECRC102 0.66 NIAGMN_08190 sfsA DNA/RNA nuclease SfsA 0.56 NIAGMN_06570 acpH ACP phosphodiesterase — —
Escherichia coli ECRC98 0.66 JDDGAC_13935 sfsA DNA/RNA nuclease SfsA 0.56 JDDGAC_12170 acpH ACP phosphodiesterase low > 86
Escherichia coli ECRC101 0.66 MCAODC_00855 sfsA DNA/RNA nuclease SfsA 0.56 MCAODC_27740 acpH ACP phosphodiesterase low > 87
Escherichia coli Nissle 1917 0.66 ECOLIN_RS00820 DNA/RNA nuclease SfsA 0.56 ECOLIN_RS02435 ACP phosphodiesterase — —
Escherichia coli ECRC100 0.66 OKFHMN_10340 sfsA DNA/RNA nuclease SfsA 0.56 OKFHMN_08515 acpH ACP phosphodiesterase low > 80
Escherichia coli ECOR27 0.66 NOLOHH_02685 sfsA DNA/RNA nuclease SfsA 0.56 NOLOHH_01450 acpH ACP phosphodiesterase low > 75
Escherichia coli ECRC99 0.66 KEDOAH_17815 sfsA DNA/RNA nuclease SfsA 0.56 KEDOAH_19450 acpH ACP phosphodiesterase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_03516 Sugar fermentation stimulation protein A 0.56 OHPLBJKB_03272 Acyl carrier protein phosphodiesterase low > 73
Escherichia coli BL21 0.66 ECD_00145 sugar fermentation stimulation protein A 0.56 ECD_00352 acyl carrier protein (ACP) phosphodiesterase; ACP hydrolyase low > 61
Escherichia coli ECOR38 0.66 HEPCGN_08290 sfsA DNA/RNA nuclease SfsA 0.56 HEPCGN_07155 acpH ACP phosphodiesterase low > 87
Escherichia coli BW25113 0.66 b0146 sfsA sugar fermentation stimulation protein A (NCBI) 0.56 b0404 yajB hypothetical protein (NCBI) low > 76
Enterobacter asburiae PDN3 0.65 EX28DRAFT_3735 sugar fermentation stimulation protein 0.56 EX28DRAFT_2567 Uncharacterized protein conserved in bacteria low > 76
Escherichia fergusonii Becca 0.65 EFB2_03898 Sugar fermentation stimulation protein A 0.57 EFB2_03653 Acyl carrier protein phosphodiesterase low > 86
Klebsiella michiganensis M5al 0.65 BWI76_RS05020 sugar fermentation stimulation protein SfsA 0.52 BWI76_RS06290 ACP phosphodiesterase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF86 Sugar/maltose fermentation stimulation protein homolog 0.54 GFF4303 Acyl carrier protein phosphodiesterase (EC 3.1.4.14) low > 78
Vibrio cholerae E7946 ATCC 55056 0.62 CSW01_03160 DNA/RNA nuclease SfsA 0.40 CSW01_18025 ACP phosphodiesterase low > 62
Shewanella loihica PV-4 0.56 Shew_3128 sugar fermentation stimulation protein (RefSeq) 0.24 Shew_2339 hypothetical protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.53 Sama_0781 sugar fermentation stimulation protein A (RefSeq) 0.22 Sama_2195 hypothetical protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.52 Shewana3_3403 sugar fermentation stimulation protein A (RefSeq) 0.16 Shewana3_1432 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.51 SO0875 sfsA sugar fermentation stimulation protein (NCBI ptt file) 0.17 SO3116 conserved hypothetical protein (NCBI ptt file) low > 76
Marinobacter adhaerens HP15 0.48 HP15_333 sugar fermentation stimulation protein-like protein 0.23 HP15_1703 acyl carrier protein phosphodiesterase low > 73
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0837 Sugar fermentation stimulation protein 0.29 Psyr_4050 Protein of unknown function DUF479 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0837 Sugar fermentation stimulation protein 0.29 Psyr_4050 Protein of unknown function DUF479 low > 86
Pseudomonas stutzeri RCH2 0.45 Psest_1005 sugar fermentation stimulation protein 0.30 Psest_3200 Uncharacterized protein conserved in bacteria low > 67
Pseudomonas putida KT2440 0.44 PP_4691 sugar fermentation stimulation protein A 0.28 PP_0922 conserved protein of unknown function low > 96
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_5162 Sugar/maltose fermentation stimulation protein homolog 0.27 Pf6N2E2_2817 Acyl carrier protein phosphodiesterase (EC 3.1.4.14) low > 103
Pseudomonas sp. RS175 0.44 PFR28_03712 Sugar fermentation stimulation protein A 0.28 PFR28_00638 Acyl carrier protein phosphodiesterase low > 88
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_16105 XRE family transcriptional regulator 0.28 AO356_04845 ACP phosphodiesterase low > 104
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS25705 DNA/RNA nuclease SfsA 0.29 PFLU_RS06860 DUF479 domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.43 PFLU_RS25705 DNA/RNA nuclease SfsA 0.29 PFLU_RS06860 DUF479 domain-containing protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_2864 Sugar/maltose fermentation stimulation protein homolog 0.28 Pf1N1B4_3253 Acyl carrier protein phosphodiesterase (EC 3.1.4.14) low > 87
Dechlorosoma suillum PS 0.43 Dsui_0297 sugar fermentation stimulation protein 0.24 Dsui_2775 hypothetical protein low > 51
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_1530 Sugar/maltose fermentation stimulation protein homolog 0.28 PfGW456L13_4575 Acyl carrier protein phosphodiesterase (EC 3.1.4.14) low > 87
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_14430 XRE family transcriptional regulator 0.28 AO353_24400 ACP phosphodiesterase low > 101
Pseudomonas simiae WCS417 0.41 PS417_23865 XRE family transcriptional regulator 0.28 PS417_06800 ACP phosphodiesterase low > 88
Alteromonas macleodii MIT1002 0.40 MIT1002_03689 Sugar fermentation stimulation protein A 0.21 MIT1002_02519 Acyl carrier protein phosphodiesterase low > 70

Not shown: 14 genomes with orthologs for HER17_RS05585 only; 6 genomes with orthologs for HER17_RS16000 only