| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pectobacterium carotovorum WPP14 | 1.0 | HER17_RS19675 | | TRAP transporter substrate-binding protein | 1.0 | HER17_RS10240 | | urea ABC transporter substrate-binding protein | 0.54 | 18 |
| Rahnella sp. WP5 | 0.80 | EX31_RS08010 | | TRAP transporter substrate-binding protein | 0.92 | EX31_RS05620 | | urea ABC transporter substrate-binding protein | low | > 89 |
| Enterobacter sp. TBS_079 | 0.75 | MPMX20_04349 | | Solute-binding protein | 0.92 | MPMX20_02250 | | Aliphatic amidase expression-regulating protein | low | > 85 |
| Pantoea sp. MT58 | 0.66 | IAI47_03230 | | TRAP transporter substrate-binding protein | 0.94 | IAI47_16280 | | urea ABC transporter substrate-binding protein | low | > 76 |
| Acidovorax sp. GW101-3H11 | 0.53 | Ac3H11_3957 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.74 | Ac3H11_3702 | | Urea ABC transporter, urea binding protein | low | > 79 |
| Pseudomonas putida KT2440 | 0.50 | PP_1169 | | D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) | 0.88 | PP_4841 | | putative Urea ABC transporter, periplasmic protein | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.50 | Psest_0363 | | tripartite ATP-independent periplasmic transporter solute receptor, DctP family | 0.84 | Psest_0567 | | urea ABC transporter, urea binding protein | low | > 67 |
| Pseudomonas fluorescens FW300-N2E2 | 0.49 | Pf6N2E2_487 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.89 | Pf6N2E2_3547 | | Urea ABC transporter, substrate binding protein UrtA | low | > 103 |
| Pseudomonas simiae WCS417 | 0.49 | PS417_17370 | | C4-dicarboxylate ABC transporter | 0.87 | PS417_02835 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS19295 | | TRAP transporter substrate-binding protein | 0.88 | PFLU_RS02905 | | urea ABC transporter substrate-binding protein | 0.38 | 45 |
| Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS19295 | | TRAP transporter substrate-binding protein | 0.88 | PFLU_RS02905 | | urea ABC transporter substrate-binding protein | low | > 109 |
| Pseudomonas sp. RS175 | 0.48 | PFR28_02438 | | Solute-binding protein | 0.89 | PFR28_05187 | | Aliphatic amidase expression-regulating protein | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_0900 | | TRAP dicarboxylate transporter- DctP subunit | 0.89 | Psyr_4426 | | amino acid/amide ABC transporter substrate-binding protein, HAAT family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_0900 | | TRAP dicarboxylate transporter- DctP subunit | 0.89 | Psyr_4426 | | amino acid/amide ABC transporter substrate-binding protein, HAAT family | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.47 | AO356_23055 | | C4-dicarboxylate ABC transporter | 0.89 | AO356_08340 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 104 |
| Bosea sp. OAE506 | 0.35 | ABIE41_RS07830 | | TRAP transporter substrate-binding protein | 0.58 | ABIE41_RS18135 | | urea ABC transporter substrate-binding protein | low | > 77 |
| Agrobacterium fabrum C58 | 0.35 | Atu3137 | | C4-dicarboxylate-binding protein | 0.59 | Atu2414 | | ABC transporter, substrate binding protein (urea/amide) | low | > 89 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.35 | GFF797 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.73 | GFF3275 | | Urea ABC transporter, substrate binding protein UrtA | low | > 90 |
| Sinorhizobium meliloti 1021 | 0.34 | SM_b21353 | | periplasmic C4-dicarboxylate transport protein | 0.57 | SM_b20605 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 103 |
| Variovorax sp. OAS795 | 0.33 | ABID97_RS10340 | | TRAP transporter substrate-binding protein | 0.74 | ABID97_RS22565 | | urea ABC transporter substrate-binding protein | low | > 91 |
| Azospirillum sp. SherDot2 | 0.33 | MPMX19_05801 | | Solute-binding protein | 0.58 | MPMX19_03828 | | Aliphatic amidase expression-regulating protein | low | > 112 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.30 | H281DRAFT_05324 | | tripartite ATP-independent transporter solute receptor, DctP family | 0.76 | H281DRAFT_00094 | | amino acid/amide ABC transporter substrate-binding protein, HAAT family | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.29 | BPHYT_RS24175 | | C4-dicarboxylate ABC transporter | 0.77 | BPHYT_RS04640 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 109 |
| Klebsiella michiganensis M5al | 0.29 | BWI76_RS24125 | | hypothetical protein | 0.90 | BWI76_RS15340 | | urea ABC transporter substrate-binding protein | low | > 92 |
| Variovorax sp. SCN45 | 0.28 | GFF2918 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.73 | GFF5799 | | Urea ABC transporter, substrate-binding protein UrtA | low | > 127 |
| Ralstonia sp. UNC404CL21Col | 0.28 | ABZR87_RS21090 | | TRAP transporter substrate-binding protein | 0.78 | ABZR87_RS14775 | | urea ABC transporter substrate-binding protein | low | > 80 |
| Serratia liquefaciens MT49 | 0.27 | IAI46_00375 | | TRAP transporter substrate-binding protein | 0.91 | IAI46_07225 | | urea ABC transporter substrate-binding protein | low | > 86 |
| Herbaspirillum seropedicae SmR1 | 0.21 | HSERO_RS04240 | | C4-dicarboxylate ABC transporter | 0.80 | HSERO_RS23580 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 78 |
| Magnetospirillum magneticum AMB-1 | 0.20 | AMB_RS04560 | | C4-dicarboxylate ABC transporter | 0.10 | AMB_RS07465 | | ABC transporter substrate-binding protein | low | > 64 |
| Dinoroseobacter shibae DFL-12 | 0.19 | Dshi_3326 | | TRAP dicarboxylate transporter, DctP subunit (RefSeq) | 0.57 | Dshi_2695 | | putative ureashort-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor (RefSeq) | low | > 64 |
| Cupriavidus basilensis FW507-4G11 | 0.18 | RR42_RS10600 | | C4-dicarboxylate ABC transporter substrate-binding protein | 0.78 | RR42_RS05630 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 128 |
| Rhodopseudomonas palustris CGA009 | 0.18 | TX73_010550 | | TRAP transporter substrate-binding protein | 0.58 | TX73_019015 | | urea ABC transporter substrate-binding protein | low | > 86 |
| Rhizobium sp. OAE497 | 0.17 | ABIE40_RS25820 | | sialic acid TRAP transporter substrate-binding protein SiaP | 0.55 | ABIE40_RS14665 | | urea ABC transporter substrate-binding protein | low | > 107 |
| Phaeobacter inhibens DSM 17395 | 0.15 | PGA1_c20680 | | TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, substrate-binding component (from data) | 0.07 | PGA1_c16560 | | extracellular ligand binding domain-containing protein | low | > 62 |
| Pseudomonas sp. S08-1 | 0.11 | OH686_16140 | | TRAP-type transporter, substrate-binding protein | 0.89 | OH686_07660 | | Urea ABC transporter, substrate-binding protein UrtA | low | > 80 |
Not shown: 25 genomes with orthologs for HER17_RS19675 only; 10 genomes with orthologs for HER17_RS10240 only