Conservation of cofitness between HER17_RS01115 and HER17_RS06280 in Pectobacterium carotovorum WPP14

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS01115 peptidylprolyl isomerase 1.0 HER17_RS06280 tRNA 5-hydroxyuridine modification protein YegQ 0.61 17
Dickeya dadantii 3937 0.94 DDA3937_RS20110 peptidylprolyl isomerase 0.90 DDA3937_RS15295 tRNA 5-hydroxyuridine modification protein YegQ low > 74
Dickeya dianthicola 67-19 0.93 HGI48_RS20250 peptidylprolyl isomerase 0.88 HGI48_RS15375 tRNA 5-hydroxyuridine modification protein YegQ low > 71
Dickeya dianthicola ME23 0.92 DZA65_RS21295 peptidyl-prolyl cis-trans isomerase 0.88 DZA65_RS16195 tRNA 5-hydroxyuridine modification protein YegQ — —
Pantoea sp. MT58 0.77 IAI47_18550 peptidylprolyl isomerase 0.81 IAI47_06845 tRNA 5-hydroxyuridine modification protein YegQ low > 76
Serratia liquefaciens MT49 0.75 IAI46_00560 peptidylprolyl isomerase 0.87 IAI46_19015 tRNA 5-hydroxyuridine modification protein YegQ low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_04278 Peptidyl-prolyl cis-trans isomerase C 0.83 OHPLBJKB_01623 putative protease YdcP low > 73
Escherichia coli ECRC62 0.73 BNILDI_04770 ppiC peptidylprolyl isomerase PpiC 0.83 BNILDI_14415 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 75
Escherichia coli ECRC102 0.73 NIAGMN_12375 ppiC peptidylprolyl isomerase PpiC 0.83 NIAGMN_22110 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli ECOR27 0.73 NOLOHH_06755 ppiC peptidylprolyl isomerase PpiC 0.83 NOLOHH_15500 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 75
Escherichia coli BL21 0.73 ECD_03653 peptidyl-prolyl cis-trans isomerase C (rotamase C) 0.83 ECD_01986 putative peptidase low > 61
Escherichia coli ECRC99 0.73 KEDOAH_13530 ppiC peptidylprolyl isomerase PpiC 0.83 KEDOAH_03985 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli ECRC101 0.73 MCAODC_05125 ppiC peptidylprolyl isomerase PpiC 0.83 MCAODC_20775 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 87
Escherichia coli Nissle 1917 0.73 ECOLIN_RS21685 peptidylprolyl isomerase PpiC 0.83 ECOLIN_RS12250 tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia fergusonii Becca 0.73 EFB2_04861 Peptidyl-prolyl cis-trans isomerase C 0.83 EFB2_01770 23S rRNA 5-hydroxycytidine synthase low > 86
Escherichia coli ECRC98 0.73 JDDGAC_18240 ppiC peptidylprolyl isomerase PpiC 0.83 JDDGAC_28275 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 86
Escherichia coli BW25113 0.73 b3775 ppiC peptidyl-prolyl cis-trans isomerase C (rotamase C) (NCBI) 0.83 b2081 yegQ predicted peptidase (NCBI) low > 76
Escherichia coli ECRC100 0.73 OKFHMN_14620 ppiC peptidylprolyl isomerase PpiC 0.83 OKFHMN_24165 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 80
Enterobacter sp. TBS_079 0.72 MPMX20_04495 Peptidyl-prolyl cis-trans isomerase C 0.83 MPMX20_03067 23S rRNA 5-hydroxycytidine synthase low > 85
Klebsiella michiganensis M5al 0.72 BWI76_RS00995 peptidyl-prolyl cis-trans isomerase 0.85 BWI76_RS19280 U32 family peptidase low > 92
Enterobacter asburiae PDN3 0.71 EX28DRAFT_4447 PPIC-type PPIASE domain 0.83 EX28DRAFT_0478 Collagenase and related proteases low > 76
Rahnella sp. WP5 0.70 EX31_RS15025 peptidylprolyl isomerase PpiC 0.87 EX31_RS20325 tRNA 5-hydroxyuridine modification protein YegQ low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF2895 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) 0.84 GFF3846 Putative protease low > 78
Escherichia coli ECOR38 0.68 HEPCGN_13330 ppiC peptidylprolyl isomerase PpiC 0.83 HEPCGN_02845 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 87
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_18890 peptidyl-prolyl cis-trans isomerase 0.75 CSW01_03750 U32 family peptidase low > 62
Alteromonas macleodii MIT1002 0.65 MIT1002_03923 Peptidyl-prolyl cis-trans isomerase C 0.71 MIT1002_02342 putative protease YhbU precursor low > 70
Shewanella loihica PV-4 0.63 Shew_3008 PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) 0.72 Shew_2783 peptidase U32 (RefSeq) low > 60
Shewanella sp. ANA-3 0.61 Shewana3_0624 PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) 0.73 Shewana3_1068 peptidase U32 (RefSeq) low > 73
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_0445 Parvulin-like peptidyl-prolyl isomerase 0.63 B158DRAFT_1722 Collagenase and related proteases low > 40
Shewanella oneidensis MR-1 0.59 SO0635 ppiC-1 peptidyl-prolyl cis-trans isomerase C (NCBI ptt file) 0.73 SO1252 peptidase, U32 family (NCBI ptt file) low > 76
Marinobacter adhaerens HP15 0.55 HP15_2629 PpiC-type peptidyl-prolyl cis-trans isomerase 0.58 HP15_2983 peptidase, U32 family low > 73
Shewanella amazonensis SB2B 0.54 Sama_1666 cell wall hydrolase/autolysin (RefSeq) 0.73 Sama_1004 U32 family peptidase (RefSeq) — —
Desulfovibrio vulgaris Miyazaki F 0.53 DvMF_0310 PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) 0.21 DvMF_2645 peptidase U32 (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.53 DVU1470 ppiC peptidyl-prolyl cis-trans isomerase C (TIGR) 0.23 DVU0654 peptidase, U32 family (TIGR) low > 55
Pseudomonas putida KT2440 0.52 PP_3079 peptidyl-prolyl cis-trans isomerase C (rotamase C) 0.70 PP_2206 putative peptidase — —
Pseudomonas sp. RS175 0.52 PFR28_01404 Peptidyl-prolyl cis-trans isomerase C 0.72 PFR28_02843 hypothetical protein — —
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_00385 peptidylprolyl isomerase 0.71 AO356_21300 protease low > 104
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_21805 peptidylprolyl isomerase 0.72 AO353_19800 protease low > 101
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_2029 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) 0.72 Pf6N2E2_45 Putative protease — —
Pseudomonas fluorescens FW300-N1B4 0.51 Pf1N1B4_5625 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) 0.72 Pf1N1B4_3925 Putative protease — —
Pseudomonas fluorescens SBW25 0.51 PFLU_RS12875 peptidyl-prolyl cis-trans isomerase 0.70 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ — —
Pseudomonas simiae WCS417 0.51 PS417_12185 peptidylprolyl isomerase 0.71 PS417_10300 protease — —
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS12875 peptidyl-prolyl cis-trans isomerase 0.70 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ — —
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_2880 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) 0.73 PfGW456L13_2485 Putative protease — —
Pseudomonas stutzeri RCH2 0.51 Psest_2778 Parvulin-like peptidyl-prolyl isomerase 0.78 Psest_4096 Collagenase and related proteases low > 67
Pseudomonas sp. S08-1 0.50 OH686_00765 Peptidyl-prolyl cis-trans isomerase PpiC 0.72 OH686_13055 Uncharacterized protease YegQ low > 80
Acinetobacter radioresistens SK82 0.48 MPMX26_02487 Peptidyl-prolyl cis-trans isomerase C 0.63 MPMX26_02040 23S rRNA 5-hydroxycytidine synthase — —

Not shown: 4 genomes with orthologs for HER17_RS01115 only; 6 genomes with orthologs for HER17_RS06280 only