Conservation of cofitness between PS417_16555 and PS417_04290 in Pseudomonas simiae WCS417

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_16555 cupin 1.0 PS417_04290 hypothetical protein 0.28 20
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS18595 cupin domain-containing protein 0.96 PFLU_RS04345 ribosome-associated protein 0.28 8
Pseudomonas fluorescens SBW25 0.98 PFLU_RS18595 cupin domain-containing protein 0.96 PFLU_RS04345 ribosome-associated protein low > 109
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_27720 cupin 0.89 AO353_05210 hypothetical protein 0.47 29
Pseudomonas sp. RS175 0.91 PFR28_02622 50S ribosomal protein L16 3-hydroxylase 0.89 PFR28_00162 hypothetical protein — —
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_283 FIG002776: hypothetical protein 0.89 Pf6N2E2_3279 FIG138315: Putative alpha helix protein — —
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_22095 cupin 0.90 AO356_07090 hypothetical protein 0.27 100
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_4045 FIG002776: hypothetical protein 0.91 Pf1N1B4_1091 FIG138315: Putative alpha helix protein — —
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_2636 FIG002776: hypothetical protein 0.91 PfGW456L13_5025 FIG138315: Putative alpha helix protein low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.88 Psyr_3193 Transcription factor jumonji, jmjC 0.89 Psyr_4155 Protein of unknown function DUF615 low > 86
Pseudomonas syringae pv. syringae B728a 0.88 Psyr_3193 Transcription factor jumonji, jmjC 0.89 Psyr_4155 Protein of unknown function DUF615 low > 86
Pseudomonas sp. S08-1 0.84 OH686_00190 hypothetical protein 0.80 OH686_08575 UPF0307 protein YjgA — —
Pseudomonas putida KT2440 0.84 PP_4017 conserved protein of unknown function 0.77 PP_0941 putative ribosome associated protein — —
Pseudomonas stutzeri RCH2 0.82 Psest_2018 Uncharacterized conserved protein 0.74 Psest_3319 Uncharacterized protein conserved in bacteria low > 67
Marinobacter adhaerens HP15 0.47 HP15_2089 cupin 4 family protein 0.35 HP15_2448 protein belonging to uncharacterized protein family UPF0307 — —
Lysobacter sp. OAE881 0.41 ABIE51_RS09000 cupin domain-containing protein 0.30 ABIE51_RS06800 ribosome biogenesis factor YjgA low > 62
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS05910 cupin domain-containing protein 0.29 ABZR86_RS21710 ribosome biogenesis factor YjgA low > 74
Rhodanobacter denitrificans MT42 0.36 LRK55_RS00715 cupin domain-containing protein 0.27 LRK55_RS03135 ribosome biogenesis factor YjgA — —
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS00940 cupin domain-containing protein 0.27 LRK54_RS03385 DUF615 domain-containing protein — —
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_05950 roxA transcription factor 0.28 OKGIIK_10270 DUF615 domain-containing protein low > 52
Acinetobacter radioresistens SK82 0.34 MPMX26_01736 putative ribosomal oxygenase 0.21 MPMX26_00549 hypothetical protein low > 36
Escherichia coli BW25113 0.31 b1128 ycfD orf, hypothetical protein (VIMSS) 0.32 b4234 yjgA hypothetical protein (NCBI) 0.24 33
Escherichia coli ECRC62 0.31 BNILDI_19090 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.32 BNILDI_07320 yjgA ribosome-associated protein — —
Escherichia coli ECOR38 0.31 HEPCGN_24085 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.32 HEPCGN_10130 yjgA ribosome-associated protein low > 85
Escherichia coli Nissle 1917 0.31 ECOLIN_RS06500 [50S ribosomal protein L16]-arginine 3-hydroxylase 0.32 ECOLIN_RS24565 ribosome biogenesis factor YjgA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_02540 50S ribosomal protein L16 3-hydroxylase 0.32 OHPLBJKB_03801 hypothetical protein low > 73
Escherichia coli ECOR27 0.31 NOLOHH_20925 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.32 NOLOHH_04190 yjgA ribosome-associated protein low > 57
Escherichia fergusonii Becca 0.31 EFB2_02847 50S ribosomal protein L16 3-hydroxylase 0.32 EFB2_04299 hypothetical protein low > 86
Escherichia coli BL21 0.31 ECD_01126 50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase 0.32 ECD_04102 ribosome-associated UPF0307 family protein low > 60
Escherichia coli ECRC101 0.31 MCAODC_22450 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.32 MCAODC_02435 yjgA ribosome-associated protein — —
Escherichia coli ECRC98 0.31 JDDGAC_06730 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.32 JDDGAC_15570 yjgA ribosome-associated protein — —
Escherichia coli ECRC102 0.31 NIAGMN_24760 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.32 NIAGMN_09780 yjgA ribosome-associated protein — —
Escherichia coli ECRC99 0.31 KEDOAH_24720 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.32 KEDOAH_16225 yjgA ribosome-associated protein — —
Escherichia coli ECRC101 0.31 OKFHMN_00635 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.32 OKFHMN_11930 yjgA ribosome-associated protein — —
Klebsiella michiganensis M5al 0.30 BWI76_RS11270 50S ribosomal protein L16 arginine hydroxylase 0.32 BWI76_RS02845 hypothetical protein — —
Enterobacter sp. TBS_079 0.30 MPMX20_01809 50S ribosomal protein L16 3-hydroxylase 0.34 MPMX20_00516 hypothetical protein — —
Enterobacter asburiae PDN3 0.30 EX28DRAFT_1802 Uncharacterized conserved protein 0.34 EX28DRAFT_3421 Uncharacterized protein conserved in bacteria — —
Shewanella oneidensis MR-1 0.30 SO2636 conserved hypothetical protein (NCBI ptt file) 0.26 SO4079 conserved hypothetical protein (NCBI ptt file) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF3413 FIG002776: hypothetical protein 0.32 GFF903 FIG138315: Putative alpha helix protein — —
Dickeya dadantii 3937 0.30 DDA3937_RS11510 cupin domain-containing protein 0.34 DDA3937_RS01495 ribosome-associated protein low > 74
Dickeya dianthicola 67-19 0.30 HGI48_RS14985 cupin domain-containing protein 0.32 HGI48_RS01410 ribosome-associated protein low > 71
Dickeya dianthicola ME23 0.29 DZA65_RS15735 cupin domain-containing protein 0.32 DZA65_RS01475 ribosome-associated protein — —
Erwinia tracheiphila SCR3 0.29 LU632_RS14600 cupin domain-containing protein 0.32 LU632_RS02140 ribosome-associated protein 0.58 41
Shewanella sp. ANA-3 0.29 Shewana3_1744 cupin 4 family protein (RefSeq) 0.25 Shewana3_3632 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.29 Shew_1557 cupin 4 family protein (RefSeq) 0.20 Shew_0415 hypothetical protein (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_2496 Uncharacterized conserved protein 0.36 B158DRAFT_2073 Uncharacterized protein conserved in bacteria low > 40
Shewanella amazonensis SB2B 0.27 Sama_2065 cupin 4 (RefSeq) 0.27 Sama_0481 hypothetical protein (RefSeq) 0.37 48
Alteromonas macleodii MIT1002 0.26 MIT1002_01824 50S ribosomal protein L16 arginine hydroxylase 0.24 MIT1002_00229 x96 protein low > 70

Not shown: 4 genomes with orthologs for PS417_16555 only; 10 genomes with orthologs for PS417_04290 only