Conservation of cofitness between Psest_1016 and Psest_4141 in Pseudomonas stutzeri RCH2

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_1016 putative TIM-barrel protein, nifR3 family 1.0 Psest_4141 3-carboxymuconate cyclase 0.26 7
Pseudomonas sp. S08-1 0.80 OH686_07610 tRNA-dihydrouridine synthase DusB 0.34 OH686_01265 hypothetical protein low > 80
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_4404 tRNA-U20-dihydrouridine synthase 0.45 Psyr_1712 conserved hypothetical protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_4404 tRNA-U20-dihydrouridine synthase 0.45 Psyr_1712 conserved hypothetical protein low > 86
Pseudomonas simiae WCS417 0.78 PS417_02950 tRNA-dihydrouridine synthase B 0.47 PS417_15140 3-carboxymuconate cyclase low > 88
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.47 PFLU_RS17155 lactonase family protein low > 109
Pseudomonas fluorescens SBW25 0.78 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.47 PFLU_RS17155 lactonase family protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_08215 tRNA-dihydrouridine synthase B 0.51 AO356_24610 3-carboxymuconate cyclase low > 104
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.48 Pf1N1B4_4626 3-carboxymuconate cyclase — —
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_13660 tRNA-dihydrouridine synthase B 0.49 AO353_23650 3-carboxymuconate cyclase low > 101
Pseudomonas sp. RS175 0.77 PFR28_05216 tRNA-dihydrouridine synthase B 0.50 PFR28_01584 6-phosphogluconolactonase low > 88
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.52 Pf6N2E2_614 3-carboxymuconate cyclase low > 103
Pseudomonas fluorescens GW456-L13 0.76 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.46 PfGW456L13_3314 D-galactono-lactonase (EC 3.1.1.-) (from data) low > 87
Pseudomonas putida KT2440 0.76 PP_4820 tRNA-dihydrouridine synthase B 0.45 PP_2021 L-alpha-hydroxyglutaric acid gamma-lactonase low > 96
Ralstonia solanacearum GMI1000 0.60 RS_RS02515 tRNA dihydrouridine synthase DusB 0.19 RS_RS18030 hemagglutinin low > 80
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS26770 tRNA dihydrouridine synthase DusB 0.34 QEN71_RS24525 lactonase family protein low > 153
Herbaspirillum seropedicae SmR1 0.60 HSERO_RS02050 tRNA-dihydrouridine synthase B 0.11 HSERO_RS15795 galactaro-1,5-lactonase (from data) low > 78
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_04249 tRNA-U20-dihydrouridine synthase 0.33 H281DRAFT_00300 6-phosphogluconolactonase low > 103
Paraburkholderia graminis OAS925 0.57 ABIE53_003489 tRNA-dihydrouridine synthase B 0.33 ABIE53_001430 6-phosphogluconolactonase low > 113
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS16585 tRNA-dihydrouridine synthase B 0.32 BPHYT_RS06110 3-carboxymuconate cyclase low > 109
Enterobacter sp. TBS_079 0.56 MPMX20_04169 tRNA-dihydrouridine synthase B 0.15 MPMX20_00527 6-phosphogluconolactonase low > 85
Enterobacter asburiae PDN3 0.55 EX28DRAFT_3313 putative TIM-barrel protein, nifR3 family 0.15 EX28DRAFT_3432 3-carboxymuconate cyclase low > 76
Klebsiella michiganensis M5al 0.55 BWI76_RS25565 tRNA dihydrouridine synthase DusB 0.15 BWI76_RS02900 6-phosphogluconolactonase — —
Serratia liquefaciens MT49 0.54 IAI46_22775 tRNA dihydrouridine synthase DusB 0.17 IAI46_22510 lactonase family protein low > 86
Variovorax sp. OAS795 0.54 ABID97_RS24735 tRNA dihydrouridine synthase DusB 0.14 ABID97_RS10310 lactonase family protein low > 91
Pantoea sp. MT58 0.53 IAI47_02385 tRNA dihydrouridine synthase DusB 0.12 IAI47_13545 6-phosphogluconolactonase low > 76
Variovorax sp. SCN45 0.53 GFF2144 tRNA-dihydrouridine synthase DusB 0.13 GFF6709 Putative hemagglutinin-related protein low > 127
Azospirillum sp. SherDot2 0.46 MPMX19_01110 tRNA-dihydrouridine synthase B 0.17 MPMX19_02888 6-phosphogluconolactonase low > 112
Pontibacter actiniarum KMM 6156, DSM 19842 0.36 CA264_17860 tRNA dihydrouridine synthase DusB 0.23 CA264_14155 hypothetical protein low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.35 CA265_RS21125 tRNA dihydrouridine synthase DusB 0.27 CA265_RS25055 6-phosphogluconolactonase low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.34 ABZR88_RS22340 tRNA dihydrouridine synthase DusB 0.28 ABZR88_RS22090 lactonase family protein low > 71
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3073 putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) 0.22 BT4399 conserved hypothetical protein (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.32 ABI39_RS06125 tRNA dihydrouridine synthase DusB 0.21 ABI39_RS08420 lactonase family protein low > 72
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS05375 tRNA dihydrouridine synthase DusB 0.22 HMPREF1078_RS14930 lactonase family protein low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_1531 putative TIM-barrel protein, nifR3 family 0.27 Echvi_3728 3-carboxymuconate cyclase low > 79
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS10945 tRNA dihydrouridine synthase DusB 0.21 HMPREF1058_RS12965 lactonase family protein low > 67
Bacteroides ovatus ATCC 8483 0.32 BACOVA_02724 TIM-barrel protein, nifR3 family 0.23 BACOVA_05227 hypothetical protein low > 94
Bacteroides stercoris CC31F 0.31 HMPREF1181_RS01530 tRNA dihydrouridine synthase DusB 0.20 HMPREF1181_RS13125 lactonase family protein low > 56

Not shown: 57 genomes with orthologs for Psest_1016 only; 1 genomes with orthologs for Psest_4141 only