Conservation of cofitness between GFF668 and GFF4054 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF668 Histidine ammonia-lyase (EC 4.3.1.3) 1.0 GFF4054 ClpB protein 0.45 20
Enterobacter asburiae PDN3 0.84 EX28DRAFT_2219 histidine ammonia-lyase (EC 4.3.1.3) 0.50 EX28DRAFT_0807 type VI secretion ATPase, ClpV1 family low > 76
Enterobacter sp. TBS_079 0.84 MPMX20_01400 Histidine ammonia-lyase 0.50 MPMX20_02660 Protein ClpV1 low > 85
Pseudomonas simiae WCS417 0.78 PS417_01750 histidine ammonia-lyase 0.51 PS417_27980 ATPase AAA low > 88
Pseudomonas fluorescens SBW25 0.78 PFLU_RS01805 histidine ammonia-lyase 0.51 PFLU_RS29660 type VI secretion system ATPase TssH low > 109
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS01805 histidine ammonia-lyase 0.51 PFLU_RS29660 type VI secretion system ATPase TssH low > 109
Serratia liquefaciens MT49 0.77 IAI46_03660 histidine ammonia-lyase 0.35 IAI46_05600 type VI secretion system ATPase TssH low > 86
Cupriavidus basilensis FW507-4G11 0.77 RR42_RS14640 histidine ammonia-lyase 0.62 RR42_RS03510 ATPase AAA low > 128
Pseudomonas sp. RS175 0.77 PFR28_04971 Histidine ammonia-lyase 0.49 PFR28_04464 Protein ClpV1 low > 88
Pseudomonas sp. S08-1 0.77 OH686_16755 histidine ammonia-lyase 0.34 OH686_12815 type VI secretion ATPase, ClpV1 family low > 80
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_09600 histidine ammonia-lyase 0.51 AO356_12245 ClpV1 family T6SS ATPase low > 104
Pseudomonas putida KT2440 0.77 PP_5032 Histidine ammonia-lyase 0.41 PP_3095 Protein ClpV1 low > 96
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_3799 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.51 Pf6N2E2_4327 ClpB protein low > 103
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_12270 histidine ammonia-lyase 0.51 AO353_09620 ClpV1 family T6SS ATPase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.76 Psyr_4833 histidine ammonia-lyase 0.41 Psyr_4958 AAA ATPase, central region:Clp, N terminal:Clp, N terminal low > 86
Pseudomonas syringae pv. syringae B728a 0.76 Psyr_4833 histidine ammonia-lyase 0.41 Psyr_4958 AAA ATPase, central region:Clp, N terminal:Clp, N terminal low > 86
Pseudomonas fluorescens FW300-N1B4 0.76 Pf1N1B4_1581 Histidine ammonia-lyase (EC 4.3.1.3) 0.51 Pf1N1B4_2056 ClpB protein low > 87
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_06080 histidine ammonia-lyase 0.35 CSW01_14595 type VI secretion system ATPase TssH low > 62
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS23515 histidine ammonia-lyase 0.60 QEN71_RS34560 type VI secretion system ATPase TssH low > 153
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_04873 histidine ammonia-lyase 0.39 H281DRAFT_05369 type VI secretion system protein VasG low > 103
Ralstonia solanacearum PSI07 0.57 RPSI07_RS11915 histidine ammonia-lyase 0.39 RPSI07_RS02950 type VI secretion system ATPase TssH low > 81
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS07555 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.60 BPHYT_RS04580 ATPase low > 109
Ralstonia solanacearum GMI1000 0.57 RS_RS13250 histidine ammonia-lyase 0.40 RS_RS20700 type VI secretion system ATPase TssH low > 80
Paraburkholderia graminis OAS925 0.57 ABIE53_001729 histidine ammonia-lyase 0.48 ABIE53_003933 type VI secretion system protein VasG low > 113
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS05390 histidine ammonia-lyase 0.39 RALBFv3_RS20025 type VI secretion system ATPase TssH low > 76
Ralstonia solanacearum UW163 0.57 UW163_RS08235 histidine ammonia-lyase 0.39 UW163_RS19150 type VI secretion system ATPase TssH — —
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS01025 histidine ammonia-lyase 0.60 ABZR87_RS13930 type VI secretion system ATPase TssH low > 80
Variovorax sp. OAS795 0.55 ABID97_RS03420 histidine ammonia-lyase 0.60 ABID97_RS08945 type VI secretion system ATPase TssH low > 91
Rahnella sp. WP5 0.55 EX31_RS06755 histidine ammonia-lyase 0.40 EX31_RS01880 type VI secretion system ATPase TssH low > 89
Variovorax sp. SCN45 0.54 GFF6409 Histidine ammonia-lyase (EC 4.3.1.3) 0.51 GFF5936 T6SS AAA+ chaperone ClpV (TssH) low > 127
Dickeya dadantii 3937 0.54 DDA3937_RS14995 histidine ammonia-lyase 0.35 DDA3937_RS07060 type VI secretion system ATPase TssH low > 74
Azospirillum sp. SherDot2 0.54 MPMX19_04940 Histidine ammonia-lyase 0.34 MPMX19_03417 Protein ClpV1 low > 112
Dickeya dianthicola 67-19 0.54 HGI48_RS15090 histidine ammonia-lyase 0.35 HGI48_RS07990 type VI secretion system ATPase TssH low > 71
Pantoea sp. MT58 0.54 IAI47_13275 histidine ammonia-lyase 0.49 IAI47_11580 type VI secretion system ATPase TssH low > 76
Dickeya dianthicola ME23 0.53 DZA65_RS15835 histidine ammonia-lyase 0.34 DZA65_RS08585 type VI secretion system ATPase TssH low > 75
Agrobacterium fabrum C58 0.48 Atu3933 histidine ammonia-lyase 0.36 Atu4344 ATP-dependent Clp protease, ATP-binding subunit low > 89
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS22680 histidine ammonia-lyase 0.40 HSERO_RS03730 ATPase low > 78
Pseudomonas stutzeri RCH2 0.20 Psest_3695 Histidine ammonia-lyase 0.35 Psest_0125 type VI secretion ATPase, ClpV1 family low > 67

Not shown: 38 genomes with orthologs for GFF668 only; 14 genomes with orthologs for GFF4054 only