Conservation of cofitness between HP15_2221 and HP15_3815 in Marinobacter adhaerens HP15

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Marinobacter adhaerens HP15 1.0 HP15_2221 pseudouridine synthase, RluA family 1.0 HP15_3815 organic radical activating enzyme 0.35 17
Pantoea sp. MT58 0.48 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.15 IAI47_04140 7-carboxy-7-deazaguanine synthase QueE low > 76
Erwinia tracheiphila SCR3 0.48 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.15 LU632_RS06390 queE 7-carboxy-7-deazaguanine synthase QueE low > 74
Alteromonas macleodii MIT1002 0.47 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.15 MIT1002_01264 7-carboxy-7-deazaguanine synthase low > 70
Enterobacter asburiae PDN3 0.47 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.15 EX28DRAFT_2855 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE low > 76
Enterobacter sp. TBS_079 0.47 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.15 MPMX20_03645 7-carboxy-7-deazaguanine synthase low > 85
Escherichia coli ECRC99 0.46 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.14 KEDOAH_07830 queE 7-carboxy-7-deazaguanine synthase QueE — —
Escherichia coli ECRC101 0.46 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.14 OKFHMN_20300 queE 7-carboxy-7-deazaguanine synthase QueE — —
Escherichia coli ECRC98 0.46 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.14 JDDGAC_23965 queE 7-carboxy-7-deazaguanine synthase QueE — —
Escherichia coli ECRC101 0.46 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.14 MCAODC_10825 queE 7-carboxy-7-deazaguanine synthase QueE — —
Escherichia coli ECRC102 0.46 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.14 NIAGMN_18070 queE 7-carboxy-7-deazaguanine synthase QueE — —
Escherichia coli Nissle 1917 0.46 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.14 ECOLIN_RS15475 7-carboxy-7-deazaguanine synthase QueE — —
Escherichia coli BL21 0.46 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.14 ECD_02622 7-carboxy-7-deazaguanine synthase; queosine biosynthesis low > 60
Klebsiella michiganensis M5al 0.46 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.14 BWI76_RS22780 7-carboxy-7-deazaguanine synthase QueE low > 92
Escherichia fergusonii Becca 0.46 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.14 EFB2_01141 7-carboxy-7-deazaguanine synthase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.14 OHPLBJKB_00957 7-carboxy-7-deazaguanine synthase low > 73
Escherichia coli ECOR38 0.46 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.14 HEPCGN_19205 queE 7-carboxy-7-deazaguanine synthase QueE low > 85
Escherichia coli BW25113 0.46 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.14 b2777 ygcF hypothetical protein (NCBI) low > 76
Escherichia coli ECOR27 0.46 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.14 NOLOHH_12170 queE 7-carboxy-7-deazaguanine synthase QueE low > 57
Escherichia coli ECRC62 0.46 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.14 BNILDI_10675 queE 7-carboxy-7-deazaguanine synthase QueE — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.14 GFF4831 Queuosine Biosynthesis QueE Radical SAM low > 78
Rahnella sp. WP5 0.46 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.15 EX31_RS07920 7-carboxy-7-deazaguanine synthase QueE low > 89
Pectobacterium carotovorum WPP14 0.44 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.15 HER17_RS04200 7-carboxy-7-deazaguanine synthase QueE low > 75
Serratia liquefaciens MT49 0.44 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.14 IAI46_03675 7-carboxy-7-deazaguanine synthase QueE low > 86
Dickeya dianthicola 67-19 0.44 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.15 HGI48_RS17035 7-carboxy-7-deazaguanine synthase QueE low > 71
Dickeya dadantii 3937 0.44 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.15 DDA3937_RS16970 7-carboxy-7-deazaguanine synthase QueE low > 74
Dickeya dianthicola ME23 0.44 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.15 DZA65_RS18110 7-carboxy-7-deazaguanine synthase QueE 0.30 73
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.54 HSERO_RS11035 7-cyano-7-deazaguanine reductase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.53 GFF4633 Queuosine Biosynthesis QueE Radical SAM low > 90
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS10090 RluA family pseudouridine synthase 0.56 ABZR87_RS12145 7-carboxy-7-deazaguanine synthase 0.53 25
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS14155 pseudouridine synthase 0.56 RR42_RS11390 7-cyano-7-deazaguanine reductase — —
Variovorax sp. OAS795 0.40 ABID97_RS08250 RluA family pseudouridine synthase 0.51 ABID97_RS07425 7-carboxy-7-deazaguanine synthase — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS19085 RluA family pseudouridine synthase 0.55 RPSI07_RS16890 7-carboxy-7-deazaguanine synthase — —
Acidovorax sp. GW101-3H11 0.40 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.55 Ac3H11_3825 Queuosine Biosynthesis QueE Radical SAM — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS14375 RluA family pseudouridine synthase 0.54 RALBFv3_RS00615 7-carboxy-7-deazaguanine synthase — —
Ralstonia solanacearum UW163 0.40 UW163_RS11840 RluA family pseudouridine synthase 0.54 UW163_RS13945 7-carboxy-7-deazaguanine synthase — —
Variovorax sp. SCN45 0.39 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) 0.50 GFF2577 7-carboxy-7-deazaguanine synthase (EC 4.3.99.3) — —
Ralstonia solanacearum GMI1000 0.39 RS_RS05155 RluA family pseudouridine synthase 0.55 RS_RS07295 7-carboxy-7-deazaguanine synthase low > 80
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS04500 RluA family pseudouridine synthase 0.59 QEN71_RS00205 7-carboxy-7-deazaguanine synthase low > 153
Paraburkholderia graminis OAS925 0.39 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase 0.58 ABIE53_000397 7-carboxy-7-deazaguanine synthase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase 0.58 H281DRAFT_02231 7-carboxy-7-deazaguanine synthase, Cx14CxxC type low > 103
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C 0.57 BPHYT_RS01505 7-cyano-7-deazaguanine reductase low > 109
Rhodospirillum rubrum S1H 0.21 Rru_A2659 Pseudouridine synthase, RluD (NCBI) 0.17 Rru_A1959 Radical SAM (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.20 A4249_RS07865 RluA family pseudouridine synthase 0.56 A4249_RS08695 7-carboxy-7-deazaguanine synthase — —
Magnetospirillum magneticum AMB-1 0.20 AMB_RS15620 RluA family pseudouridine synthase 0.51 AMB_RS18645 7-carboxy-7-deazaguanine synthase low > 64
Caulobacter crescentus NA1000 0.19 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.61 CCNA_03261 queuosine biosynthesis protein QueE low > 66
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.61 CCNA_03261 queuosine biosynthesis protein QueE low > 67
Sphingomonas koreensis DSMZ 15582 0.19 Ga0059261_1033 pseudouridine synthase, RluA family 0.48 Ga0059261_3210 Organic radical activating enzymes — —
Azospirillum brasilense Sp245 0.18 AZOBR_RS06905 pseudouridine synthase 0.17 AZOBR_RS04155 radical SAM protein low > 97

Not shown: 33 genomes with orthologs for HP15_2221 only; 15 genomes with orthologs for HP15_3815 only