Conservation of cofitness between GFF4682 and GFF335 in Variovorax sp. SCN45

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF4682 Transcriptional regulator, MerR family 1.0 GFF335 Cytosine deaminase (EC 3.5.4.1) 0.51 5
Variovorax sp. OAS795 0.89 ABID97_RS20720 Cd(II)/Pb(II)-responsive transcriptional regulator 0.93 ABID97_RS16895 amidohydrolase family protein low > 91
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_958 Cd(II)/Pb(II)-responsive transcriptional regulator 0.39 PfGW456L13_2445 Cytosine deaminase (EC 3.5.4.1) low > 87
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_3947 Cd(II)/Pb(II)-responsive transcriptional regulator 0.39 Pf6N2E2_34 Cytosine deaminase (EC 3.5.4.1) low > 103
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_10375 Cd(II)/Pb(II)-responsive transcriptional regulator 0.40 AO356_21245 cytosine deaminase low > 104
Pseudomonas sp. RS175 0.54 PFR28_04825 Mercuric resistance operon regulatory protein 0.39 PFR28_02854 Cytosine deaminase low > 88
Pseudomonas putida KT2440 0.54 PP_5140 Transcriptional regulator, MerR family 0.38 PP_3189 cytosine deaminase / isoguanine deaminase low > 96
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_2290 Cd(II)/Pb(II)-responsive transcriptional regulator 0.39 Pf1N1B4_113 Cytosine deaminase (EC 3.5.4.1) — —
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS28620 Cd(II)/Pb(II)-responsive transcriptional regulator 0.38 PFLU_RS10380 cytosine deaminase low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS28620 Cd(II)/Pb(II)-responsive transcriptional regulator 0.38 PFLU_RS10380 cytosine deaminase low > 109
Pseudomonas simiae WCS417 0.53 PS417_26960 Cd(II)/Pb(II)-responsive transcriptional regulator 0.39 PS417_09800 cytosine deaminase — —
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_08425 Cd(II)/Pb(II)-responsive transcriptional regulator 0.39 AO353_19755 cytosine deaminase low > 101
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS00140 MerR family transcriptional regulator 0.73 BPHYT_RS12880 cytosine deaminase low > 109
Paraburkholderia graminis OAS925 0.49 ABIE53_000366 Cd(II)/Pb(II)-responsive transcriptional regulator 0.72 ABIE53_002799 cytosine deaminase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_02296 transcriptional regulator, MerR family 0.73 H281DRAFT_00460 cytosine deaminase low > 103
Dickeya dadantii 3937 0.46 DDA3937_RS02550 Cd(II)/Pb(II)-responsive transcriptional regulator 0.38 DDA3937_RS17280 cytosine deaminase low > 74
Dickeya dianthicola 67-19 0.46 HGI48_RS02580 Cd(II)/Pb(II)-responsive transcriptional regulator 0.38 HGI48_RS17335 cytosine deaminase low > 71
Dickeya dianthicola ME23 0.46 DZA65_RS02685 Cd(II)/Pb(II)-responsive transcriptional regulator 0.38 DZA65_RS18425 cytosine deaminase low > 75
Ralstonia solanacearum PSI07 0.44 RPSI07_RS01310 Cd(II)/Pb(II)-responsive transcriptional regulator 0.73 RPSI07_RS15790 cytosine deaminase low > 81
Ralstonia solanacearum GMI1000 0.44 RS_RS18685 Cd(II)/Pb(II)-responsive transcriptional regulator 0.74 RS_RS08030 cytosine deaminase low > 80
Ralstonia solanacearum UW163 0.44 UW163_RS17335 Cd(II)/Pb(II)-responsive transcriptional regulator 0.73 UW163_RS15005 cytosine deaminase — —
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS21850 Cd(II)/Pb(II)-responsive transcriptional regulator 0.73 RALBFv3_RS01695 cytosine deaminase low > 76
Marinobacter adhaerens HP15 0.40 HP15_2969 transcriptional regulator, MerR family 0.38 HP15_2772 N-isopropylammelide isopropylaminohydrolase low > 73
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS19900 MerR family transcriptional regulator 0.72 RR42_RS30785 cytosine deaminase low > 128
Acidovorax sp. GW101-3H11 0.34 Ac3H11_406 Transcriptional regulator, MerR family 0.77 Ac3H11_2437 Cytosine deaminase (EC 3.5.4.1) low > 79
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF2387 transcriptional regulator, MerR family 0.44 GFF2960 Cytosine deaminase (EC 3.5.4.1) 0.39 19
Azospirillum brasilense Sp245 0.33 AZOBR_RS27570 MerR family transcriptional regulator 0.75 AZOBR_RS31895 cytosine deaminase low > 97
Enterobacter asburiae PDN3 0.32 EX28DRAFT_0035 Zn(II)-responsive transcriptional regulator 0.43 EX28DRAFT_4163 Cytosine deaminase and related metal-dependent hydrolases low > 76
Escherichia fergusonii Becca 0.31 EFB2_00531 HTH-type transcriptional regulator ZntR 0.43 EFB2_03701 Cytosine deaminase low > 86
Escherichia coli ECRC99 0.31 KEDOAH_10640 zntR Zn(2+)-responsive transcriptional regulator 0.43 KEDOAH_19120 codA cytosine/isoguanine deaminase — —
Escherichia coli ECRC98 0.31 JDDGAC_21130 zntR Zn(2+)-responsive transcriptional regulator 0.43 JDDGAC_12500 codA cytosine/isoguanine deaminase low > 86
Escherichia coli ECRC100 0.31 OKFHMN_17500 zntR Zn(2+)-responsive transcriptional regulator 0.43 OKFHMN_08845 codA cytosine/isoguanine deaminase low > 80
Enterobacter sp. TBS_079 0.31 MPMX20_04200 HTH-type transcriptional regulator ZntR 0.42 MPMX20_04268 Cytosine deaminase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_00411 HTH-type transcriptional regulator ZntR 0.44 OHPLBJKB_03334 Cytosine deaminase low > 73
Escherichia coli ECRC101 0.31 MCAODC_08030 zntR Zn(2+)-responsive transcriptional regulator 0.43 MCAODC_28075 codA cytosine/isoguanine deaminase low > 87
Escherichia coli Nissle 1917 0.31 ECOLIN_RS18895 Zn(2+)-responsive transcriptional regulator 0.43 ECOLIN_RS02175 cytosine/isoguanine deaminase — —
Escherichia coli ECRC102 0.31 NIAGMN_15270 zntR Zn(2+)-responsive transcriptional regulator 0.43 NIAGMN_06900 codA cytosine/isoguanine deaminase — —
Escherichia coli ECOR27 0.31 NOLOHH_09300 zntR Zn(2+)-responsive transcriptional regulator 0.44 NOLOHH_01745 codA cytosine/isoguanine deaminase low > 75
Escherichia coli BW25113 0.31 b3292 zntR zinc-responsive transcriptional regulator (NCBI) 0.43 b0337 codA cytosine deaminase (NCBI) low > 76
Escherichia coli ECRC62 0.31 BNILDI_02220 zntR Zn(2+)-responsive transcriptional regulator 0.44 BNILDI_23160 codA cytosine/isoguanine deaminase low > 75
Escherichia coli BL21 0.31 ECD_03143 zntA gene transcriptional activator 0.43 ECD_00291 cytosine/isoguanine deaminase low > 61
Escherichia coli ECOR38 0.31 HEPCGN_16330 zntR Zn(2+)-responsive transcriptional regulator 0.44 HEPCGN_07460 codA cytosine/isoguanine deaminase low > 87
Klebsiella michiganensis M5al 0.31 BWI76_RS25700 heavy metal-responsive transcriptional regulator 0.43 BWI76_RS26030 cytosine deaminase low > 92
Pantoea sp. MT58 0.30 IAI47_02260 Zn(2+)-responsive transcriptional regulator 0.42 IAI47_01925 cytosine deaminase low > 76
Rahnella sp. WP5 0.29 EX31_RS16005 Zn(2+)-responsive transcriptional regulator 0.44 EX31_RS04665 cytosine deaminase low > 89
Serratia liquefaciens MT49 0.28 IAI46_23295 Zn(2+)-responsive transcriptional regulator 0.43 IAI46_23650 cytosine deaminase low > 86

Not shown: 17 genomes with orthologs for GFF4682 only; 10 genomes with orthologs for GFF335 only