Conservation of cofitness between Psest_1844 and Psest_0032 in Pseudomonas stutzeri RCH2

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_1844 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 1.0 Psest_0032 D-alanyl-D-alanine carboxypeptidase 0.41 4
Pseudomonas sp. S08-1 0.74 OH686_21900 Soluble lytic murein transglycosylase 0.67 OH686_12475 Murein-DD-endopeptidase low > 80
Pseudomonas sp. RS175 0.72 PFR28_01106 Soluble lytic murein transglycosylase 0.60 PFR28_01222 D-alanyl-D-alanine endopeptidase low > 88
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_2294 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.60 Pf6N2E2_2222 Murein-DD-endopeptidase (EC 3.4.99.-) 0.34 5
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_02350 lytic transglycosylase 0.60 AO356_01780 D-alanyl-D-alanine endopeptidase 0.26 16
Pseudomonas sp. DMC3 0.72 GFF1267 Soluble lytic murein transglycosylase 0.59 GFF1440 D-alanyl-D-alanine endopeptidase low > 89
Pseudomonas segetis P6 0.71 ACVTMO_RS14865 transglycosylase SLT domain-containing protein 0.69 ACVTMO_RS01415 pbpG D-alanyl-D-alanine endopeptidase low > 75
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_4045 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.59 PfGW456L13_2549 Murein-DD-endopeptidase (EC 3.4.99.-) 0.65 6
Pseudomonas sp. SVBP6 0.71 COO64_RS09370 transglycosylase SLT domain-containing protein 0.62 COO64_RS10205 pbpG D-alanyl-D-alanine endopeptidase low > 93
Pseudomonas putida KT2440 0.71 PP_2130 putative Soluble lytic transglycosylase 0.62 PP_3794 periplasmic murein D-alanyl-D-alanine endopeptidase low > 96
Pseudomonas sp. BP01 0.71 JOY50_RS25015 transglycosylase SLT domain-containing protein 0.62 JOY50_RS04855 pbpG D-alanyl-D-alanine endopeptidase low > 84
Pseudomonas orientalis W4I3 0.71 QF045_RS10195 transglycosylase SLT domain-containing protein 0.59 QF045_RS18935 D-alanyl-D-alanine endopeptidase low > 93
Pseudomonas fluorescens FW300-N1B4 0.70 Pf1N1B4_3898 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.59 Pf1N1B4_3942 Murein-DD-endopeptidase (EC 3.4.99.-) low > 87
Pseudomonas lactucae CFBP13502 0.70 GEMAOFIL_01643 Soluble lytic murein transglycosylase 0.58 GEMAOFIL_03750 D-alanyl-D-alanine endopeptidase low > 96
Pseudomonas simiae WCS417 0.70 PS417_07550 lytic transglycosylase 0.59 PS417_17270 D-alanyl-D-alanine endopeptidase low > 88
Pseudomonas fluorescens SBW25 0.70 PFLU_RS07630 transglycosylase SLT domain-containing protein 0.59 PFLU_RS19205 D-alanyl-D-alanine endopeptidase 0.71 77
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS07630 transglycosylase SLT domain-containing protein 0.59 PFLU_RS19205 D-alanyl-D-alanine endopeptidase 0.46 52
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_00530 lytic transglycosylase 0.60 AO353_20135 D-alanyl-D-alanine endopeptidase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.69 Psyr_3295 SLT 0.62 Psyr_2414 murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas syringae pv. syringae B728a 0.69 Psyr_3295 SLT 0.62 Psyr_2414 murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas aeruginosa MRSN321 0.68 DY961_RS01860 slt;inference=COORDINATES lytic transglycosylase Slt 0.63 DY961_RS08135 pbpG;go_function=serine-type D-alanyl-D-alanine endopeptidase low > 100
Pseudomonas aeruginosa PA14 0.68 IKLFDK_15365 lytic transglycosylase Slt 0.63 IKLFDK_03850 D-alanyl-D-alanine endopeptidase low > 98
Pseudomonas aeruginosa PUPa3 0.67 DQ20_RS33715 slt;inference=COORDINATES lytic transglycosylase Slt 0.63 DQ20_RS44675 pbpG;go_function=serine-type D-alanyl-D-alanine endopeptidase 0.28 54
Shewanella sp. ANA-3 0.26 Shewana3_2236 lytic transglycosylase, catalytic (RefSeq) 0.64 Shewana3_3292 pbpG D-alanyl-D-alanine endopeptidase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.25 SO2040 soluble lytic murein transglycosylase, putative (NCBI ptt file) 0.64 SO0999 pbpG D-alanyl-D-alanine endopeptidase (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.24 IAI46_02985 murein transglycosylase 0.60 IAI46_06820 D-alanyl-D-alanine endopeptidase 0.67 17
Dickeya dadantii 3937 0.23 DDA3937_RS18455 murein transglycosylase 0.62 DDA3937_RS08735 D-alanyl-D-alanine endopeptidase low > 74
Escherichia coli BW25113 0.23 b4392 slt soluble lytic murein transglycosylase (VIMSS) 0.59 b2134 pbpG penicillin-binding protein 7 (VIMSS) low > 76
Escherichia fergusonii Becca 0.23 EFB2_04052 Soluble lytic murein transglycosylase 0.59 EFB2_01721 D-alanyl-D-alanine endopeptidase low > 86
Escherichia coli ECRC100 0.23 OKFHMN_11170 sltY murein transglycosylase 0.59 OKFHMN_23645 pbpG D-alanyl-D-alanine endopeptidase low > 79
Escherichia coli ECRC99 0.23 KEDOAH_16985 sltY murein transglycosylase 0.59 KEDOAH_04540 pbpG D-alanyl-D-alanine endopeptidase — —
Escherichia coli ECRC98 0.23 JDDGAC_14765 sltY murein transglycosylase 0.59 JDDGAC_27600 pbpG D-alanyl-D-alanine endopeptidase 0.40 36
Escherichia coli HS(pFamp)R (ATCC 700891) 0.23 OHPLBJKB_03669 Soluble lytic murein transglycosylase 0.59 OHPLBJKB_01576 D-alanyl-D-alanine endopeptidase low > 74
Escherichia coli ECOR27 0.23 NOLOHH_03500 sltY murein transglycosylase 0.59 NOLOHH_15185 pbpG D-alanyl-D-alanine endopeptidase low > 76
Escherichia coli ECRC101 0.23 MCAODC_01685 sltY murein transglycosylase 0.59 MCAODC_14695 pbpG D-alanyl-D-alanine endopeptidase low > 87
Escherichia coli ECRC62 0.23 BNILDI_08095 sltY murein transglycosylase 0.59 BNILDI_14135 pbpG D-alanyl-D-alanine endopeptidase low > 75
Escherichia coli ECRC102 0.23 NIAGMN_09020 sltY murein transglycosylase 0.59 NIAGMN_21410 pbpG D-alanyl-D-alanine endopeptidase low > 80
Escherichia coli BL21 0.23 ECD_04268 lytic murein transglycosylase, soluble 0.59 ECD_02064 D-alanyl-D-alanine endopeptidase low > 61
Pantoea agglomerans CFBP13505 P0401 0.23 PagCFBP13505_RS21845 murein transglycosylase 0.57 PagCFBP13505_RS03915 D-alanyl-D-alanine endopeptidase low > 74
Escherichia coli ECOR38 0.23 HEPCGN_09175 sltY murein transglycosylase 0.59 HEPCGN_02220 pbpG D-alanyl-D-alanine endopeptidase low > 88
Pantoea sp. MT58 0.23 IAI47_16260 murein transglycosylase 0.57 IAI47_13395 D-alanyl-D-alanine endopeptidase low > 76
Escherichia coli Nissle 1917 0.23 ECOLIN_RS25210 murein transglycosylase 0.59 ECOLIN_RS12500 D-alanyl-D-alanine endopeptidase low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF1060 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.59 GFF3811 Murein-DD-endopeptidase (EC 3.4.99.-) low > 78
Pectobacterium carotovorum WPP14 0.23 HER17_RS02750 murein transglycosylase 0.62 HER17_RS13260 D-alanyl-D-alanine endopeptidase low > 75
Enterobacter asburiae PDN3 0.23 EX28DRAFT_3602 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 0.61 EX28DRAFT_0426 D-alanyl-D-alanine carboxypeptidase low > 76
Dickeya dianthicola 67-19 0.22 HGI48_RS18385 murein transglycosylase 0.61 HGI48_RS08820 D-alanyl-D-alanine endopeptidase low > 71
Dickeya dianthicola ME23 0.22 DZA65_RS19525 murein transglycosylase 0.61 DZA65_RS09125 D-alanyl-D-alanine endopeptidase low > 75
Rahnella sp. WP5 0.22 EX31_RS03985 murein transglycosylase 0.56 EX31_RS23805 D-alanyl-D-alanine endopeptidase low > 89
Enterobacter sp. TBS_079 0.22 MPMX20_00699 Soluble lytic murein transglycosylase 0.60 MPMX20_03103 D-alanyl-D-alanine endopeptidase low > 85
Shewanella amazonensis SB2B 0.22 Sama_1895 soluble lytic murein transglycosylase, putative (RefSeq) 0.59 Sama_0072 pbpG D-alanyl-D-alanine endopeptidase (RefSeq) low > 62
Klebsiella michiganensis M5al 0.21 BWI76_RS04185 murein transglycosylase 0.60 BWI76_RS19525 D-alanyl-D-alanine endopeptidase low > 92
Klebsiella pneumoniae MKP103 0.21 KDGMDA_12450 murein transglycosylase 0.60 KDGMDA_26535 D-alanyl-D-alanine endopeptidase low > 95
Vibrio cholerae E7946 ATCC 55056 0.21 CSW01_03655 murein transglycosylase 0.61 CSW01_18475 D-alanyl-D-alanine endopeptidase low > 62
Erwinia tracheiphila SCR3 0.20 LU632_RS02575 sltY murein transglycosylase 0.60 LU632_RS09265 pbpG D-alanyl-D-alanine endopeptidase low > 73
Erwinia tracheiphila HP pepo 2.2 0.20 IJEDHG_06340 sltY murein transglycosylase 0.60 IJEDHG_19700 pbpG D-alanyl-D-alanine endopeptidase low > 61
Erwinia amylovora T8 0.20 OLJFJH_01535 murein transglycosylase 0.60 OLJFJH_16650 D-alanyl-D-alanine endopeptidase low > 58

Not shown: 28 genomes with orthologs for Psest_1844 only; 1 genomes with orthologs for Psest_0032 only